morpholibj_chamfer_distance_map.md

Distance analysis MorpholibJ Chamfer distance map

Assuming one wants to analyse distances of cells towards a common structures such es vessels, one can exploit MorpholibJs Chamfer distance distance maps to quantify distances.

Installation

In order to use the MorphoLibJ extension, please follow the corresponding installation instructions.

Application

• Starting point: Intensity image showing nuclei
  • Threshold Otsu
    • Connected Components Labeling
      • Pull To ROIManager
• Starting point: Binary image representing vessels for example
  • Binary Not
    • Morpho Lib J Chamfer Distance Map

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