GetOrganelle based on Metassembler results

[Zichen-Zhou]

Dear R&D teams and users,

I'm trying to assemble insect mitogenomes based on output files from metassembler. Metassembler analysises conducts assembly based on results from other assemblers (in my case, I used results from SPAdes, MaSuRCA and megahit for metassembler). However, I cannot find any .gfa/.fastg output from Metassembler/MaSuRCA/megahit results. I wonder if anyone has try similar things before? How can I run GetOrganelle based in this situations.

My workflow is like:
SPAdes
MaSuRCA - Metassembler - GetOrganelle
megahit /

Thanks for your attention.

Regards,
Zichen
(You can also contact me through [email protected])