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README.md

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* **Stop conditions:** DE-Sim makes it easy to terminate simulations when specific criteria are reached. Researchers can specify stop conditions as functions that return true when a simulation should conclude.
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* **Results checkpointing:** DE-Sim makes it easy to record the results of simulations by using a configurable checkpointing module.
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* **Reproducible simulations:** To help researchers debug simulations, repeated executions of the same simulation with the same configuration and same random number generator seed produce the same results.
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* **Space-time visualizations:** DE-Sim generates space-time visualizations of simulation trajectories (\autoref{fig:phold_space_time_plot}). These diagrams can help researchers understand and debug simulations.
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* **Space-time visualizations:** DE-Sim generates space-time visualizations of simulation trajectories. These diagrams can help researchers understand and debug simulations.
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## Projects that use *DE-Sim*
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*DE-Sim* has been used to develop [WC-Sim](https://github.com/KarrLab/wc_sim), a multi-algorithmic simulator for [whole-cell models](https://www.wholecell.org).

codemeta.json

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"affiliation": "Icahn Institute for Data Science and Genomic Technology and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA"
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}
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],
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"citation": https://doi.org/10.21105/joss.02685
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,
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"citation": https://doi.org/10.21105/joss.02685,
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"readme": "https://github.com/KarrLab/de_sim/blob/master/README.md",
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"license": "https://spdx.org/licenses/MIT",
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"isAccessibleForFree": true,

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