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Not able to run snakemake #10

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camiloramirezgo opened this issue Sep 17, 2019 · 2 comments
Open

Not able to run snakemake #10

camiloramirezgo opened this issue Sep 17, 2019 · 2 comments
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bug Something isn't working

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@camiloramirezgo
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camiloramirezgo commented Sep 17, 2019 •
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When running snakemake --use-conda --cores 3 I get the following error:

Building DAG of jobs...
WorkflowError:
Failed to open environment file C:\Users\camilorg\Box Sync\UNESCAP\unescap_model\env\osemosys.yaml:
URLError: <urlopen error unknown url type: c>
@camiloramirezgo camiloramirezgo added the bug Something isn't working label Sep 17, 2019
@willu47
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willu47 commented Sep 18, 2019

Seems related to this bug report in snakemake: https://bitbucket.org/snakemake/snakemake/issues/481/urlopen-error-with-script

@camiloramirezgo
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camiloramirezgo commented Sep 23, 2019 •
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If I remove or comment the conda: "env/osemosys.yaml" line in the snakemake file, and run snakemake --use-conda --cores 3 with a conda environment with snakemake and glpksol installed in it, the code runs properly.

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@willu47 @camiloramirezgo