From 059f37aed944618cfa65d84f3308df20eba25c02 Mon Sep 17 00:00:00 2001 From: "Anthony D. Blaom" Date: Thu, 3 Nov 2022 08:12:50 +1300 Subject: [PATCH 1/2] update example --- examples/bigtest/Manifest.toml | 798 ++++++++++++++++++++++----------- examples/bigtest/Project.toml | 1 + examples/bigtest/notebook.jl | 32 +- src/test.jl | 6 + 4 files changed, 543 insertions(+), 294 deletions(-) diff --git a/examples/bigtest/Manifest.toml b/examples/bigtest/Manifest.toml index b42fd0e..5eefa82 100644 --- a/examples/bigtest/Manifest.toml +++ b/examples/bigtest/Manifest.toml @@ -1,7 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.7.3" +julia_version = "1.8.2" manifest_format = "2.0" +project_hash = "d29d59619d3377cfa1daef368b3e6f52fd4c3bd6" [[deps.ARFFFiles]] deps = ["CategoricalArrays", "Dates", "Parsers", "Tables"] @@ -16,9 +17,15 @@ uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.2.1" [[deps.AbstractTrees]] -git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" +git-tree-sha1 = "52b3b436f8f73133d7bc3a6c71ee7ed6ab2ab754" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.3.4" +version = "0.4.3" + +[[deps.Accessors]] +deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "Test"] +git-tree-sha1 = "eb7a1342ff77f4f9b6552605f27fd432745a53a3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.22" [[deps.Adapt]] deps = ["LinearAlgebra"] @@ -26,8 +33,14 @@ git-tree-sha1 = "195c5505521008abea5aee4f96930717958eac6f" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.4.0" +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -42,16 +55,34 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" [[deps.ArrayInterface]] -deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] -git-tree-sha1 = "81f0cb60dc994ca17f68d9fb7c942a5ae70d9ee4" +deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "Static"] +git-tree-sha1 = "d6173480145eb632d6571c148d94b9d3d773820e" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "5.0.8" +version = "6.0.23" [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "40debc9f72d0511e12d817c7ca06a721b6423ba3" +git-tree-sha1 = "732cddf5c7a3d4e7d4829012042221a724a30674" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.17" +version = "0.1.24" + +[[deps.ArrayInterfaceOffsetArrays]] +deps = ["ArrayInterface", "OffsetArrays", "Static"] +git-tree-sha1 = "c49f6bad95a30defff7c637731f00934c7289c50" +uuid = "015c0d05-e682-4f19-8f0a-679ce4c54826" +version = "0.1.6" + +[[deps.ArrayInterfaceStaticArrays]] +deps = ["Adapt", "ArrayInterface", "ArrayInterfaceStaticArraysCore", "LinearAlgebra", "Static", "StaticArrays"] +git-tree-sha1 = "efb000a9f643f018d5154e56814e338b5746c560" +uuid = "b0d46f97-bff5-4637-a19a-dd75974142cd" +version = "0.1.4" + +[[deps.ArrayInterfaceStaticArraysCore]] +deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" +uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" +version = "0.1.3" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -73,32 +104,36 @@ git-tree-sha1 = "306bb5574b0c1c56d7e1207581516c557d105cad" uuid = "fbb218c0-5317-5bc6-957e-2ee96dd4b1f0" version = "0.3.5" +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] +git-tree-sha1 = "7fe6d92c4f281cf4ca6f2fba0ce7b299742da7ca" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.37" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + [[deps.BetaML]] -deps = ["CategoricalArrays", "Combinatorics", "DelimitedFiles", "Distributions", "DocStringExtensions", "ForceImport", "LinearAlgebra", "MLJModelInterface", "PDMats", "Printf", "ProgressMeter", "Random", "Reexport", "StableRNGs", "Statistics", "Test", "Zygote"] -git-tree-sha1 = "960e973345a8458a8037c12918afc2260d57c9d3" +deps = ["AbstractTrees", "CategoricalArrays", "Combinatorics", "DelimitedFiles", "Distributions", "DocStringExtensions", "ForceImport", "JLD2", "LinearAlgebra", "LoopVectorization", "MLJModelInterface", "PDMats", "Printf", "ProgressMeter", "Random", "Reexport", "StableRNGs", "Statistics", "Test", "Zygote"] +git-tree-sha1 = "020db68f9716a4cea5d331f4d5524efcf52a4065" uuid = "024491cd-cc6b-443e-8034-08ea7eb7db2b" -version = "0.7.0" - -[[deps.BinaryProvider]] -deps = ["Libdl", "Logging", "SHA"] -git-tree-sha1 = "ecdec412a9abc8db54c0efc5548c64dfce072058" -uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232" -version = "0.5.10" +version = "0.9.0" -[[deps.Blosc]] -deps = ["Blosc_jll"] -git-tree-sha1 = "310b77648d38c223d947ff3f50f511d08690b8d5" -uuid = "a74b3585-a348-5f62-a45c-50e91977d574" -version = "0.7.3" +[[deps.BitFlags]] +git-tree-sha1 = "84259bb6172806304b9101094a7cc4bc6f56dbc6" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.5" -[[deps.Blosc_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Pkg", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "91d6baa911283650df649d0aea7c28639273ae7b" -uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" -version = "1.21.1+0" +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "eaee37f76339077f86679787a71990c4e465477f" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.4" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -111,11 +146,17 @@ git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.2" +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "Static"] +git-tree-sha1 = "9bdd5aceea9fa109073ace6b430a24839d79315e" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.1.27" + [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] -git-tree-sha1 = "49f14b6c56a2da47608fe30aed711b5882264d7a" +git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.9.11" +version = "0.10.7" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"] @@ -131,27 +172,27 @@ version = "0.5.1" [[deps.CategoricalArrays]] deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "5f5a975d996026a8dd877c35fe26a7b8179c02ba" +git-tree-sha1 = "5084cc1a28976dd1642c9f337b28a3cb03e0f7d2" uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.6" +version = "0.10.7" [[deps.CategoricalDistributions]] deps = ["CategoricalArrays", "Distributions", "Missings", "OrderedCollections", "Random", "ScientificTypes", "UnicodePlots"] -git-tree-sha1 = "036d44b2d1ed2a8a3409790103e277ab5cbe30df" +git-tree-sha1 = "23fe4c6668776fedfd3747c545cd0d1a5190eb15" uuid = "af321ab8-2d2e-40a6-b165-3d674595d28e" -version = "0.1.8" +version = "0.1.9" [[deps.ChainRules]] -deps = ["ChainRulesCore", "Compat", "Distributed", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics"] -git-tree-sha1 = "d596983b9e9f7838b54758c575a2a460d0031ea0" +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] +git-tree-sha1 = "d7d816527558cb8373e8f7a746d88eb8a167b023" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.39.2" +version = "1.44.7" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "80ca332f6dcb2508adba68f22f551adb2d00a624" +git-tree-sha1 = "e7ff6cadf743c098e08fca25c91103ee4303c9bb" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.15.3" +version = "1.15.6" [[deps.ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] @@ -159,11 +200,17 @@ git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" version = "0.1.4" +[[deps.CloseOpenIntervals]] +deps = ["ArrayInterface", "Static"] +git-tree-sha1 = "5522c338564580adf5d58d91e43a55db0fa5fb39" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.10" + [[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "75479b7df4167267d75294d14b58244695beb2ac" +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.2" +version = "0.14.3" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -208,13 +255,19 @@ version = "0.3.0" [[deps.Compat]] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "9be8be1d8a6f44b96482c8af52238ea7987da3e3" +git-tree-sha1 = "78bee250c6826e1cf805a88b7f1e86025275d208" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.45.0" +version = "3.46.0" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "0.5.2+0" + +[[deps.CompositionsBase]] +git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.1" [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" @@ -229,9 +282,15 @@ version = "1.7.0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "59d00b3139a9de4eb961057eabb65ac6522be954" +git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.0" +version = "1.4.1" + +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -240,9 +299,15 @@ version = "0.6.2" [[deps.CorpusLoaders]] deps = ["CSV", "DataDeps", "Glob", "InternedStrings", "LightXML", "MultiResolutionIterators", "StringEncodings", "WordTokenizers"] -git-tree-sha1 = "33240ee1f21bb569c3656a84595ff9d31c3e79d5" +git-tree-sha1 = "01a12a78eca5da25b95a661716f4416d4264bced" uuid = "214a0ac2-f95b-54f7-a80b-442ed9c2c9e8" -version = "0.3.4" +version = "0.3.5" + +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -250,21 +315,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40" +git-tree-sha1 = "46d2680e618f8abd007bce0c3026cb0c4a8f2032" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.10.0" +version = "1.12.0" [[deps.DataDeps]] -deps = ["BinaryProvider", "HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] -git-tree-sha1 = "e299d8267135ef2f9c941a764006697082c1e7e8" +deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] +git-tree-sha1 = "bc0a264d3e7b3eeb0b6fc9f6481f970697f29805" uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -version = "0.7.8" +version = "0.7.10" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "daa21eb85147f72e41f6352a57fccea377e310a9" +git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.3.4" +version = "1.3.6" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -287,6 +352,11 @@ git-tree-sha1 = "fb3f7ff27befb9877bee84076dd9173185d7d86a" uuid = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb" version = "0.11.2" +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[deps.DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" @@ -298,16 +368,16 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[deps.DiffResults]] -deps = ["StaticArrays"] -git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805" +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.0.3" +version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "28d605d9a0ac17118fe2c5e9ce0fbb76c3ceb120" +git-tree-sha1 = "8b7a4d23e22f5d44883671da70865ca98f2ebf9d" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.11.0" +version = "1.12.0" [[deps.Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -321,19 +391,20 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "aafa0665e3db0d3d0890cdc8191ea03dc279b042" +git-tree-sha1 = "04db820ebcfc1e053bd8cbb8d8bccf0ff3ead3f7" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.66" +version = "0.25.76" [[deps.DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "5158c2b41018c5f7eb1470d558127ac274eca0c9" +git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.1" +version = "0.9.2" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" [[deps.DualNumbers]] deps = ["Calculus", "NaNMath", "SpecialFunctions"] @@ -343,9 +414,9 @@ version = "0.6.8" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d" +git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" -version = "2.2.3+0" +version = "2.2.4+0" [[deps.EarlyStopping]] deps = ["Dates", "Statistics"] @@ -353,17 +424,28 @@ git-tree-sha1 = "98fdf08b707aaf69f524a6cd0a67858cefe0cfb6" uuid = "792122b4-ca99-40de-a6bc-6742525f08b6" version = "0.3.0" +[[deps.EvoLinear]] +deps = ["LoopVectorization", "MLJModelInterface", "Random", "Statistics", "StatsBase"] +git-tree-sha1 = "772dadb7a86a3c8deacb0dc31daaac671f41bad4" +uuid = "ab853011-1780-437f-b4b5-5de6f4777246" +version = "0.3.0" + [[deps.EvoTrees]] -deps = ["BSON", "CUDA", "CategoricalArrays", "Distributions", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"] -git-tree-sha1 = "c56bad6d829ad924e21bcc29a91873ea33a84d9c" +deps = ["BSON", "CUDA", "CategoricalArrays", "Distributions", "LoopVectorization", "MLJModelInterface", "NetworkLayout", "Random", "RecipesBase", "Statistics", "StatsBase", "Tables"] +git-tree-sha1 = "c86975c57b9dc78a76be92fe04d8fb8898acce9e" uuid = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5" -version = "0.10.0" +version = "0.12.5" [[deps.ExprTools]] git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.8" +[[deps.Extents]] +git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" +uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" +version = "0.1.1" + [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" @@ -376,32 +458,44 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "94f5101b96d2d968ace56f7f2db19d0a5f592e28" +git-tree-sha1 = "7be5f99f7d15578798f338f5433b6c432ea8037b" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.15.0" +version = "1.16.0" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "129b104185df66e408edd6625d480b7f9e9823a0" +git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.18" +version = "0.9.20" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" +git-tree-sha1 = "802bfc139833d2ba893dd9e62ba1767c88d708ae" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.12.8" +version = "0.13.5" [[deps.FiniteDiff]] deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "cb8c5f0074153ace28ce5100714df4378ad885e0" +git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.14.0" +version = "2.15.0" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -410,10 +504,16 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["AbstractTrees", "Adapt", "ArrayInterface", "CUDA", "CodecZlib", "Colors", "DelimitedFiles", "Functors", "Juno", "LinearAlgebra", "MacroTools", "NNlib", "NNlibCUDA", "Pkg", "Printf", "Random", "Reexport", "SHA", "SparseArrays", "Statistics", "StatsBase", "Test", "ZipFile", "Zygote"] -git-tree-sha1 = "511b7c48eebb602a8f63e7d6c63e25633468dc16" +deps = ["Adapt", "ArrayInterface", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Test", "Zygote"] +git-tree-sha1 = "96dc065bf4a998e8adeebc0ff1302902b6e59362" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.12.10" +version = "0.13.4" + +[[deps.FoldsThreads]] +deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] +git-tree-sha1 = "eb8e1989b9028f7e0985b4268dabe94682249025" +uuid = "9c68100b-dfe1-47cf-94c8-95104e173443" +version = "0.1.1" [[deps.ForceImport]] deps = ["Test"] @@ -429,9 +529,9 @@ version = "0.4.2" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "2f18915445b248731ec5db4e4a17e451020bf21e" +git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.30" +version = "0.10.32" [[deps.FreeType]] deps = ["CEnum", "FreeType2_jll"] @@ -445,11 +545,10 @@ git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" version = "2.10.4+0" -[[deps.FreeTypeAbstraction]] -deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] -git-tree-sha1 = "38a92e40157100e796690421e34a11c107205c86" -uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" -version = "0.10.0" +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" [[deps.Functors]] git-tree-sha1 = "223fffa49ca0ff9ce4f875be001ffe173b2b7de4" @@ -461,34 +560,40 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "039118892476c2bf045a43b88fcb75ed566000ff" +deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] +git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.0" +version = "1.8.1" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "73145f1d724b5ee0e90098aec39a65e9697429a6" +git-tree-sha1 = "45d7deaf05cbb44116ba785d147c518ab46352d7" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.4.2" +version = "8.5.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "d88b17a38322e153c519f5a9ed8d91e9baa03d8f" +git-tree-sha1 = "6872f5ec8fd1a38880f027a26739d42dcda6691f" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.1" +version = "0.1.2" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "1067cd05184719ba86f19cf1d49d57f0bcbabbf6" +git-tree-sha1 = "76f70a337a153c1632104af19d29023dbb6f30dd" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.16.2" +version = "0.16.6" + +[[deps.GeoInterface]] +deps = ["Extents"] +git-tree-sha1 = "fb28b5dc239d0174d7297310ef7b84a11804dfab" +uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" +version = "1.0.1" [[deps.GeometryBasics]] -deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "83ea630384a13fc4f002b77690bc0afeb4255ac9" +deps = ["EarCut_jll", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "12a584db96f1d460421d5fb8860822971cdb8455" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.2" +version = "0.4.4" [[deps.Glob]] git-tree-sha1 = "4df9f7e06108728ebf00a0a11edee4b29a482bb2" @@ -496,16 +601,16 @@ uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.0" [[deps.HDF5]] -deps = ["Blosc", "Compat", "HDF5_jll", "Libdl", "Mmap", "Random", "Requires"] -git-tree-sha1 = "698c099c6613d7b7f151832868728f426abe698b" +deps = ["Compat", "HDF5_jll", "Libdl", "Mmap", "Random", "Requires"] +git-tree-sha1 = "19effd6b5af759c8aaeb9c77f89422d3f975ab65" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.15.7" +version = "0.16.12" [[deps.HDF5_jll]] deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenSSL_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "c003b31e2e818bc512b0ff99d7dce03b0c1359f5" +git-tree-sha1 = "4cc2bb72df6ff40b055295fdef6d92955f9dede8" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.12.2+1" +version = "1.12.2+2" [[deps.HTML_Entities]] deps = ["StrTables"] @@ -514,10 +619,16 @@ uuid = "7693890a-d069-55fe-a829-b4a6d304f0ee" version = "1.0.1" [[deps.HTTP]] -deps = ["Base64", "Dates", "IniFile", "Logging", "MbedTLS", "NetworkOptions", "Sockets", "URIs"] -git-tree-sha1 = "0fa77022fe4b511826b39c894c90daf5fce3334a" +deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "a97d47758e933cd5fe5ea181d178936a9fc60427" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "0.9.17" +version = "1.5.1" + +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "d076c069de9afda45e379f4be46f1f54bdf37ca9" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.9" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] @@ -527,9 +638,9 @@ version = "0.3.11" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "af14a478780ca78d5eb9908b263023096c2b9d64" +git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.6" +version = "0.4.7" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -541,11 +652,16 @@ git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" version = "0.5.1" +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + [[deps.InlineStrings]] deps = ["Parsers"] -git-tree-sha1 = "d19f9edd8c34760dca2de2b503f969d8700ed288" +git-tree-sha1 = "a62189e59d33e1615feb7a48c0bea7c11e4dc61d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.1.4" +version = "1.3.0" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -564,16 +680,16 @@ uuid = "7d512f48-7fb1-5a58-b986-67e6dc259f01" version = "0.7.0" [[deps.Interpolations]] -deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "b7bc05649af456efc75d178846f47006c2c4c3c7" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "842dd89a6cb75e02e85fdd75c760cdc43f5d6863" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.13.6" +version = "0.14.6" [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "b3364212fb5d870f724876ffcd34dd8ec6d98918" +git-tree-sha1 = "49510dfcb407e572524ba94aeae2fced1f3feb0f" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.7" +version = "0.1.8" [[deps.InvertedIndices]] git-tree-sha1 = "bee5f1ef5bf65df56bdd2e40447590b272a5471f" @@ -607,6 +723,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"] +git-tree-sha1 = "1c3ff7416cb727ebf4bab0491a56a296d7b8cf1d" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.4.25" + [[deps.JLLWrappers]] deps = ["Preferences"] git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" @@ -619,11 +741,11 @@ git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" -[[deps.Juno]] -deps = ["Base64", "Logging", "Media", "Profile"] -git-tree-sha1 = "07cb43290a840908a771552911a6274bc6c072c7" -uuid = "e5e0dc1b-0480-54bc-9374-aad01c23163d" -version = "0.8.4" +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -673,22 +795,25 @@ git-tree-sha1 = "42938ab65e9ed3c3029a8d2c58382ca75bdab243" uuid = "a5e1c1ea-c99a-51d3-a14d-a9a37257b02d" version = "1.8.0" +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] +git-tree-sha1 = "73e2e40eb02d6ccd191a8a9f8cee20db8d5df010" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.11" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" -[[deps.LazyModules]] -git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" -uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" -version = "0.3.1" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.3" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "7.84.0+0" [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] @@ -697,6 +822,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.10.2+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -708,10 +834,10 @@ uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" version = "1.16.1+1" [[deps.LightGBM]] -deps = ["Dates", "Libdl", "MLJModelInterface", "StatsBase"] -git-tree-sha1 = "3ab6a0b9b0894dec750da06fede643e71cc6f7e8" +deps = ["Dates", "Libdl", "MLJModelInterface", "SparseArrays", "Statistics"] +git-tree-sha1 = 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uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "5d4d2d9904227b8bd66386c1138cf4d5ffa826bf" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "0.4.9" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "9f6030ca92d1a816e931abb657219c9fc4991a96" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.136" + [[deps.LossFunctions]] deps = ["InteractiveUtils", "Markdown", "RecipesBase"] git-tree-sha1 = "53cd63a12f06a43eef6f4aafb910ac755c122be7" uuid = 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[[deps.MLJXGBoostInterface]] deps = ["MLJModelInterface", "SparseArrays", "Tables", "XGBoost"] @@ -882,17 +1014,33 @@ git-tree-sha1 = "7a3cf5d42d164d9b9493de6b975ec00c8302be85" uuid = "54119dfa-1dab-4055-a167-80440f4f7a91" version = "0.2.1" +[[deps.MLStyle]] +git-tree-sha1 = "43f9be9c281179fe44205e2dc19f22e71e022d41" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.15" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "DelimitedFiles", "FLoops", "FoldsThreads", "Random", "ShowCases", "Statistics", "StatsBase", "Transducers"] +git-tree-sha1 = "824e9dfc7509cab1ec73ba77b55a916bb2905e26" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.2.11" + [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf" +git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.9" +version = "0.5.10" + +[[deps.ManualMemory]] +git-tree-sha1 = 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-git-tree-sha1 = "7008a3412d823e29d370ddc77411d593bd8a3d03" +git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.9.1" +version = "0.10.0" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -946,9 +1102,9 @@ version = "7.8.2" [[deps.NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Requires", "Statistics"] -git-tree-sha1 = "415108fd88d6f55cedf7ee940c7d4b01fad85421" +git-tree-sha1 = "00bcfcea7b2063807fdcab2e0ce86ef00b8b8000" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.9" +version = "0.8.10" [[deps.NNlibCUDA]] deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"] @@ -957,27 +1113,34 @@ uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" version = "0.2.4" [[deps.NaNMath]] -git-tree-sha1 = "b086b7ea07f8e38cf122f5016af580881ac914fe" +deps = ["OpenLibm_jll"] +git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" uuid = 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[[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "0e353ed734b1747fc20cd4cba0edd9ac027eff6a" +git-tree-sha1 = "440165bf08bc500b8fe4a7be2dc83271a00c0716" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.11" +version = "0.4.12" [[deps.NetworkLayout]] deps = ["GeometryBasics", "LinearAlgebra", "Random", "Requires", "SparseArrays"] @@ -987,12 +1150,13 @@ version = "0.4.4" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" [[deps.OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "1ea784113a6aa054c5ebd95945fa5e52c2f378e7" +git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.7" +version = "1.12.8" [[deps.OneRule]] deps = ["CategoricalArrays", "MLJModelInterface", "Tables"] @@ -1003,22 +1167,30 @@ version = "0.5.1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.20+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+0" [[deps.OpenML]] deps = ["ARFFFiles", "HTTP", "JSON", "Markdown", "Pkg"] -git-tree-sha1 = "06080992e86a93957bfe2e12d3181443cedf2400" +git-tree-sha1 = "88dfa70c818f7a4728c6b82a72a0e597e083938b" uuid = "8b6db2d4-7670-4922-a472-f9537c81ab66" -version = "0.2.0" +version = "0.3.0" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "3c3c4a401d267b04942545b1e964a20279587fd7" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.3.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3" +git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.17+0" +version = "1.1.19+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1028,9 +1200,15 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "7351d1daa3dad1bcf67c79d1ba34dd3f6136c9aa" +git-tree-sha1 = "b9fe76d1a39807fdcf790b991981a922de0c3050" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.1" +version = "1.7.3" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "1ef34738708e3f31994b52693286dabcb3d29f6b" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.2.9" [[deps.OrderedCollections]] git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" @@ -1039,9 +1217,9 @@ version = "1.4.1" [[deps.OutlierDetectionInterface]] deps = ["CategoricalArrays", "MLJModelInterface", "Reexport"] -git-tree-sha1 = "39752011cd7d2bab4893306596c5d60c0ba12f5f" +git-tree-sha1 = "48f4fd9951360cd4d51345fc7a31ba108dc24350" uuid = "1722ece6-f894-4ffc-b6be-6ca1174e2011" -version = "0.1.8" +version = "0.1.9" [[deps.OutlierDetectionNeighbors]] deps = ["Combinatorics", "Distances", "LinearAlgebra", "NearestNeighbors", "OutlierDetectionInterface", "Statistics"] @@ -1051,9 +1229,9 @@ version = "0.1.3" [[deps.OutlierDetectionNetworks]] deps = ["CategoricalArrays", "Flux", "IterTools", "LinearAlgebra", "OutlierDetectionInterface", "Statistics"] -git-tree-sha1 = "cbccb05ae94972ef794c809d9aec36db6b5f3b7e" +git-tree-sha1 = "bb67783257b8dc5f16b10ce73182e90acf9f9bb4" uuid = "c7f57e37-4fcb-4a0b-a36c-c2204bc839a7" -version = "0.1.2" +version = "0.1.3" [[deps.OutlierDetectionPython]] deps = ["OutlierDetectionInterface", "PyCall"] @@ -1081,9 +1259,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates"] -git-tree-sha1 = "0044b23da09b5608b4ecacb4e5e6c6332f833a7e" +git-tree-sha1 = "6c01a9b494f6d2a9fc180a08b182fcb06f0958a0" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.3.2" +version = "2.4.2" [[deps.PartialLeastSquaresRegressor]] deps = ["LinearAlgebra", "MLJModelInterface", "Random", "Statistics"] @@ -1094,6 +1272,13 @@ version = "2.2.0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.8.0" + +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "b42fb2292fbbaed36f25d33a15c8cc0b4f287fcf" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.1.10" [[deps.PooledArrays]] deps = ["DataAPI", "Future"] @@ -1113,6 +1298,11 @@ git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.3.0" +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + [[deps.PrettyPrinting]] git-tree-sha1 = "4be53d093e9e37772cc89e1009e8f6ad10c4681b" uuid = "54e16d92-306c-5ea0-a30b-337be88ac337" @@ -1128,9 +1318,11 @@ version = "1.3.1" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[deps.Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] @@ -1140,15 +1332,15 @@ version = "1.7.2" [[deps.PyCall]] deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"] -git-tree-sha1 = "1fc929f47d7c151c839c5fc1375929766fb8edcc" +git-tree-sha1 = "53b8b07b721b77144a0fbbbc2675222ebf40a02d" uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" -version = "1.93.1" +version = "1.94.1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "78aadffb3efd2155af139781b8a8df1ef279ea39" +git-tree-sha1 = "97aa253e65b784fd13e83774cadc95b38011d734" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.4.2" +version = "2.6.0" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1183,15 +1375,22 @@ uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" version = "0.1.0" [[deps.RecipesBase]] -git-tree-sha1 = "6bf3f380ff52ce0832ddd3a2a7b9538ed1bcca7d" +deps = ["SnoopPrecompile"] +git-tree-sha1 = "d12e612bba40d189cead6ff857ddb67bd2e6a387" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.2.1" +version = "1.3.1" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.0" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" @@ -1212,12 +1411,30 @@ version = "0.3.0+0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SIMDDualNumbers]] +deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"] +git-tree-sha1 = "dd4195d308df24f33fb10dde7c22103ba88887fa" +uuid = "3cdde19b-5bb0-4aaf-8931-af3e248e098b" +version = "0.1.1" + +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "938c9ecffb28338a6b8b970bda0f3806a65e7906" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.36" [[deps.ScientificTypes]] deps = ["CategoricalArrays", "ColorTypes", "Dates", "Distributions", "PrettyTables", "Reexport", "ScientificTypesBase", "StatisticalTraits", "Tables"] -git-tree-sha1 = "ba70c9a6e4c81cc3634e3e80bb8163ab5ef57eb8" +git-tree-sha1 = "75ccd10ca65b939dab03b812994e571bf1e3e1da" uuid = "321657f4-b219-11e9-178b-2701a2544e81" -version = "3.0.0" +version = "3.0.2" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1236,29 +1453,50 @@ git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e" version = "0.5.0" +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.1.1" + [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "db8481cf5d6278a121184809e9eb1628943c7704" +git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.13" +version = "1.3.16" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" [[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "Requires"] -git-tree-sha1 = "77172cadd2fdfa0c84c87e3a01215a4ca7723310" +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.0.0" +version = "1.1.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.ShiftedArrays]] -git-tree-sha1 = "22395afdcf37d6709a5a0766cc4a5ca52cb85ea0" +git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "1.0.0" +version = "2.0.0" + +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SnoopPrecompile]] +git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" +uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" +version = "1.0.1" [[deps.Snowball]] deps = ["Languages", "Snowball_jll", "WordTokenizers"] @@ -1267,10 +1505,10 @@ uuid = "fb8f903a-0164-4e73-9ffe-431110250c3b" version = "0.1.0" [[deps.Snowball_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "35031519df40fbf0d4a6d2faae4f00e117b0ad11" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ff3a185a583dca7265cbfcaae1da16aa3b6a962" uuid = "88f46535-a3c0-54f4-998e-4320a1339f51" -version = "2.0.0+0" +version = "2.2.0+0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -1291,6 +1529,12 @@ git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.1.7" +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + [[deps.StableRNGs]] deps = ["Random", "Test"] git-tree-sha1 = "3be7d49667040add7ee151fefaf1f8c04c8c8276" @@ -1299,20 +1543,20 @@ version = "1.0.0" [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "5d2c08cef80c7a3a8ba9ca023031a85c263012c5" +git-tree-sha1 = "de4f0a4f049a4c87e4948c04acff37baf1be01a6" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.6.6" +version = "0.7.7" [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "23368a3313d12a2326ad0035f0db0c0966f438ef" +git-tree-sha1 = "f86b3a049e5d05227b10e15dbb315c5b90f14988" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.2" +version = "1.5.9" [[deps.StaticArraysCore]] -git-tree-sha1 = "66fe9eb253f910fe8cf161953880cfdaef01cdf0" +git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.0.1" +version = "1.4.0" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] @@ -1326,15 +1570,15 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8d7530a38dbd2c397be7ddd01a424e4f411dcc41" +git-tree-sha1 = "f9af7f195fb13589dd2e2d57fdb401717d2eb1f6" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.2.2" +version = "1.5.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "0005d75f43ff23688914536c5e9d5ac94f8077f7" +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.20" +version = "0.33.21" [[deps.StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -1344,9 +1588,9 @@ version = "1.0.1" [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "4352d5badd1bc8bf0a8c825e886fa1eda4f0f967" +git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.30" +version = "0.6.33" [[deps.StrTables]] deps = ["Dates"] @@ -1361,10 +1605,10 @@ uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" version = "0.3.5" [[deps.StructArrays]] -deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"] -git-tree-sha1 = "ec47fb6069c57f1cee2f67541bf8f23415146de7" +deps = ["Adapt", "DataAPI", "StaticArraysCore", "Tables"] +git-tree-sha1 = "13237798b407150a6d2e2bce5d793d7d9576e99e" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.11" +version = "0.6.13" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1373,6 +1617,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.0" [[deps.TSVD]] deps = ["Adapt", "LinearAlgebra"] @@ -1388,13 +1633,14 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "5ce79ce186cc678bbb5c5681ca3379d1ddae11a1" +git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.7.0" +version = "1.10.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.1" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -1412,17 +1658,29 @@ git-tree-sha1 = "bc85e54209c30e69e1925460ec0257a916683f59" uuid = "a2db99b7-8b79-58f8-94bf-bbc811eef33d" version = "0.7.3" +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "f8629df51cab659d70d2e5618a430b4d3f37f2c3" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.0" + [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "464d64b2510a25e6efe410e7edab14fffdc333df" +git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.20" +version = "0.5.21" [[deps.TranscodingStreams]] deps = ["Random", "Test"] -git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c" +git-tree-sha1 = "8a75929dcd3c38611db2f8d08546decb514fcadf" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.6" +version = "0.9.9" + +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "77fea79baa5b22aeda896a8d9c6445a74500a2c2" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.74" [[deps.URIs]] git-tree-sha1 = "e59ecc5a41b000fa94423a578d29290c7266fc10" @@ -1442,22 +1700,28 @@ version = "1.0.2" uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[deps.UnicodePlots]] -deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeTypeAbstraction", "LazyModules", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"] -git-tree-sha1 = "a2a83d67213fceb792b5f265b939e0049a26c76d" +deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeType", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "Requires", "SnoopPrecompile", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"] +git-tree-sha1 = "390b2e8e5535f5beb50885d1a1059f460547d3a5" uuid = "b8865327-cd53-5732-bb35-84acbb429228" -version = "3.0.4" +version = "3.1.6" [[deps.Unitful]] deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "b649200e887a487468b71821e2644382699f1b0f" +git-tree-sha1 = "d57a4ed70b6f9ff1da6719f5f2713706d57e0d66" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.11.0" +version = "1.12.0" [[deps.UnsafeArrays]] git-tree-sha1 = "3350f94f6caa02f324a23645bf524fc9334c7488" uuid = "c4a57d5a-5b31-53a6-b365-19f8c011fbd6" version = "1.0.4" +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] +git-tree-sha1 = "ba9d398034a2ba78059391492730889c6e45cf15" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.54" + [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" @@ -1489,9 +1753,9 @@ version = "1.5.2" [[deps.XGBoost_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl", "Pkg"] -git-tree-sha1 = "ba2ca02a779cfa13a32741933667c9ba3ead1711" +git-tree-sha1 = "abad0afcb0d2b35be3413590cc813902ac55f979" uuid = "a5c6f535-4255-5ca2-a466-0e519f119c46" -version = "1.6.1+0" +version = "1.6.2+0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] @@ -1499,27 +1763,16 @@ git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.9.14+0" -[[deps.ZipFile]] -deps = ["Libdl", "Printf", "Zlib_jll"] -git-tree-sha1 = "3593e69e469d2111389a9bd06bac1f3d730ac6de" -uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea" -version = "0.9.4" - [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.2.12+3" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "91822d41345b9b9b84babe4debd18dd6ccf45311" +git-tree-sha1 = "66cc604b9a27a660e25a54e408b4371123a186a6" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.43" +version = "0.6.49" [[deps.ZygoteRules]] deps = ["MacroTools"] @@ -1530,6 +1783,7 @@ version = "0.2.2" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.1.1+0" [[deps.liblinear_jll]] deps = ["Libdl", "Pkg"] @@ -1546,7 +1800,9 @@ version = "3.25.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.48.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+0" diff --git a/examples/bigtest/Project.toml b/examples/bigtest/Project.toml index 4e6b3a8..c60a733 100644 --- a/examples/bigtest/Project.toml +++ b/examples/bigtest/Project.toml @@ -1,6 +1,7 @@ [deps] BetaML = "024491cd-cc6b-443e-8034-08ea7eb7db2b" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +EvoLinear = "ab853011-1780-437f-b4b5-5de6f4777246" EvoTrees = "f6006082-12f8-11e9-0c9c-0d5d367ab1e5" InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240" LightGBM = "7acf609c-83a4-11e9-1ffb-b912bcd3b04a" diff --git a/examples/bigtest/notebook.jl b/examples/bigtest/notebook.jl index efc82e9..911e32d 100644 --- a/examples/bigtest/notebook.jl +++ b/examples/bigtest/notebook.jl @@ -24,6 +24,10 @@ known_problems = models() do model any([ # https://github.com/lalvim/PartialLeastSquaresRegressor.jl/issues/29 model.package_name == "PartialLeastSquaresRegressor", + # https://github.com/jeremiedb/EvoLinear.jl/issues/12 + model.package_name == "EvoLinear", + # waiting for BetaML 0.9.1: + model.package_name == "BetaML", ]) end @@ -41,12 +45,10 @@ fails1, report1 = verbosity=2, ) -fails1 |> DataFrame +@assert isempty(fails1) #- -report1 |> DataFrame - # # Classification @@ -55,21 +57,9 @@ known_problems = models() do model "ScikitLearn", "LIBSVM", "XGBoost", - ] || (name = model.name, package_name = model.package_name) in [ - - # https://github.com/JuliaAI/MLJMultivariateStatsInterface.jl/issues/41 - (name = "LDA", package_name = "MultivariateStats"), - (name = "SubspaceLDA", package_name = "MultivariateStats"), - (name = "BayesianLDA", package_name = "MultivariateStats"), - (name = "BayesianSubspaceLDA", package_name = "MultivariateStats"), - - # https://github.com/JuliaAI/MLJBase.jl/issues/781 - (name = "DecisionTreeClassifier", package_name="BetaML"), - (name="RandomForestClassifier", package_name="BetaML"), - - # https://github.com/alan-turing-institute/MLJ.jl/issues/939 - (name = "NuSVC", package_name="LIBSVM"), - ] + "BetaML", # waiting for BetaML 0.9.1: + "EvoLinear", # https://github.com/jeremiedb/EvoLinear.jl/issues/12 + ] || (name = model.name, package_name = model.package_name) in [] end MLJTestIntegration.test_single_target_classifiers( @@ -86,8 +76,4 @@ fails2, report2 = verbosity=2 ) -fails2 |> DataFrame - -#- - -report2 |> DataFrame +@assert isempty(fails2) diff --git a/src/test.jl b/src/test.jl index ed1ad0b..9dd16a9 100644 --- a/src/test.jl +++ b/src/test.jl @@ -10,6 +10,10 @@ function next!(p) end const ENSEMBLE_TARGET_ELSCITYPE = Union{Missing, Continuous, Finite} +const WARN_FAILURES_ENCOUNTERED = + "Some errors were encountered. To isolate specific errors you may want "* + "test again, specifiying `throw=false` to get a full stack trace. You may also want "* + "limit tests to problem model(s). " """ test(models, data...; mod=Main, level=2, throw=false, verbosity=1) @@ -455,5 +459,7 @@ function test(model_proxies, data...; mod=Main, level=2, throw=false, verbosity= end + isempty(failures) || verbosity > -1 && @warn WARN_FAILURES_ENCOUNTERED + return failures, summary end From 0895a972a2194330a8810a5272779621087eb28d Mon Sep 17 00:00:00 2001 From: "Anthony D. Blaom" Date: Thu, 3 Nov 2022 08:50:02 +1300 Subject: [PATCH 2/2] bump 0.2.5 --- Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Project.toml b/Project.toml index 95c6294..36380dc 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "MLJTestIntegration" uuid = "697918b4-fdc1-4f9e-8ff9-929724cee270" authors = ["Anthony D. Blaom "] -version = "0.2.4" +version = "0.2.5" [deps] MLJ = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7"