-
Notifications
You must be signed in to change notification settings - Fork 88
161 lines (134 loc) · 4.64 KB
/
test.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
name: Test
on:
push:
pull_request:
schedule:
- cron: '42 4 5,20 * *'
jobs:
Test:
runs-on: ubuntu-latest
strategy:
fail-fast: true
matrix:
#python-version: [3.8, 3.9, '3.10', 3]
python-version: [3]
#MPI: ['mpich', 'openmpi', 'no']
MPI: ['no']
defaults:
run:
# this is needed, because otherwise conda env is not available
shell: bash -l {0}
steps:
- name: Install build dependencies
run: |
sudo apt-get update && sudo apt-get -y --no-install-recommends install -y -qq libblas{3,-dev} liblapack{3,-dev} libatlas-base-dev cmake build-essential git gfortran
- name: Install openmpi
if: ${{ matrix.MPI == 'openmpi' }}
run: |
sudo apt-get install -qq openmpi-bin libopenmpi-dev python-mpi4py;
update-alternatives --list mpi|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpi;
update-alternatives --list mpirun|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpirun;
- name: Install mpich
if: ${{ matrix.MPI == 'mpich' }}
run: |
sudo apt-get install -qq mpich libmpich-dev python-mpi4py;
update-alternatives --list mpi|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpi;
update-alternatives --list mpirun|grep "$WITHMPI" | xargs -rt sudo update-alternatives --set mpirun;
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: conda-incubator/setup-miniconda@v2
with:
channels: conda-forge
python-version: ${{ matrix.python-version }}
mamba-version: "*"
- name: Install python dependencies
run: |
mamba install --quiet --file conda-requirements.txt corner
pip install --user coveralls
conda list
conda info -a
- name: No-MPI case
if: ${{ matrix.MPI != 'no' }}
run: |
pip install --user mpi4py
- name: Install MultiNest
run: |
git clone https://github.com/JohannesBuchner/MultiNest
mkdir -p MultiNest/build; pushd MultiNest/build; cmake .. && make && popd
test -e MultiNest/lib/libmultinest.so
- name: Install PyMultiNest
run: |
python setup.py install --user
python -c 'import pymultinest'|grep 'LD_LIBRARY_PATH'
- name: Install Cuba
run: |
git clone https://github.com/JohannesBuchner/cuba
pushd cuba && ./configure && ./makesharedlib.sh && popd
echo LD_LIBRARY_PATH=MultiNest/lib/:cuba/:${LD_LIBRARY_PATH} >> $GITHUB_ENV
'echo "backend: Agg" > matplotlibrc'
- name: Test imports
run: |
python -c 'import pymultinest'
python -c 'import pycuba'
rm -rf chains/
- name: No-MPI tests
if: ${{ matrix.MPI == 'no' }}
run: |
coverage run setup.py test
python pymultinest_demo_minimal.py
python pymultinest_demo.py
- name: MPI tests
if: ${{ matrix.MPI != 'no' }}
run: |
python -c 'import mpi4py' &&
mpiexec -np 4 python pymultinest_demo_minimal.py;
python -c 'import mpi4py' &&
mpiexec -np 4 python pymultinest_demo.py;
- name: Long filename test
run: |
python tests/pymultinest_long_name_test.py;
- name: Marginal scripts test
run: |
python multinest_marginals.py chains/3-
python multinest_marginals_fancy.py chains/3-
python multinest_marginals_corner.py chains/3-
- name: Test PyCuba
run: |
python pycuba_demo.py
- name: Coveralls Finished
uses: coverallsapp/github-action@master
with:
github-token: ${{ secrets.github_token }}
parallel-finished: true
CondaTest:
runs-on: ubuntu-latest
defaults:
run:
# this is needed, because otherwise conda env is not available
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: false
channels: conda-forge
python-version: ${{ matrix.python-version }}
environment-file: conda-requirements.txt
mamba-version: "*"
- name: Install dependencies
run: |
mamba install --quiet multinest
- name: Test imports
run: |
python -m pip install .
python -c 'import pymultinest'
- name: Tests
run: |
python pymultinest_demo_minimal.py