neuroCombat can be installed in R by typing the following commands:
library(devtools)
install_github("jfortin1/neuroCombatData")
This also required to have neuroCombat installed:
install_github("jfortin1/neuroCombat_Rpackage")
The neuroCombatData package contains a dataset called seCorticalThickness
that contains simulated multi-site cortical thickness measurements (263 subjects across 9 sites).Data were simulated based on a subset of the UCSF FreeSurfer cross-sectional cortical thickness processed data.The goal of the simulation was to create a dataset that mimics both the technical variability and biological variability observed in a in real-world study. Imaging features (ROIs) correspond to the featured measured in the FreeSurfer software (v6.0).
The data can be accessed using the following code:
library(neuroCombatData)
load(seCorticalThickess)