From 9702f240635e3ed0de0c9c5f0af48669397a0db3 Mon Sep 17 00:00:00 2001
From: Jedrzej Orbik <Jendker@users.noreply.github.com>
Date: Wed, 25 Sep 2024 02:38:35 +0200
Subject: [PATCH] Install with stow

---
 .github/workflows/tests.yml                   | 12 +---
 .gitignore                                    |  2 +-
 .aliases => common/.aliases                   |  0
 {nvim => common/.config/nvim}/init.lua        |  0
 {nvim => common/.config/nvim}/lazy-lock.json  |  2 +-
 {nvim => common/.config/nvim}/lua/common.lua  |  0
 .../nvim}/lua/config_plugins/gitsigns.lua     |  0
 .../nvim}/lua/config_plugins/lsp-zero.lua     |  0
 .../nvim}/lua/config_plugins/telescope.lua    |  0
 .../nvim}/lua/config_plugins/treesitter.lua   |  0
 .../.config/nvim}/lua/debugging.lua           |  0
 .../.config/nvim}/lua/ftplugin.lua            |  0
 {nvim => common/.config/nvim}/lua/keymaps.lua |  0
 .../template/user/populate_scripts.lua        |  0
 .../lua/overseer/template/user/run_script.lua |  0
 .../template/user/run_script_with_args.lua    |  0
 {nvim => common/.config/nvim}/lua/p.lua       |  0
 {nvim => common/.config/nvim}/lua/plugins.lua |  0
 .../.config/nvim}/lua/settings.lua            |  0
 .../.config/nvim}/plugin/filetypes.lua        |  0
 .../nvim}/snippets/global.code-snippets       |  0
 .../.config/nvim}/snippets/markdown.json      |  0
 .../.config/nvim}/snippets/package.json       |  0
 .../.config/nvim}/snippets/python.json        |  0
 .../.config/nvim}/snippets/shellscript.json   |  0
 .p10k.zsh => common/.p10k.zsh                 |  0
 .tmux.conf => common/.tmux.conf               |  0
 .wezterm.lua => common/.wezterm.lua           | 10 ++-
 debian/clangd                                 |  1 +
 dotfiles_private                              |  2 +-
 install.sh                                    | 53 --------------
 macos/.unison/default.prf                     | 17 +++++
 macos/Library/Preferences/clangd              |  1 +
 {clangd => redundant/clangd}/config.yaml      |  0
 .../debian/install.sh                         |  4 +-
 .../debian/install_min.sh                     |  6 +-
 scripts/install.sh                            | 72 +++++++++++++++++++
 {macos => scripts/macos}/install.sh           | 12 ++--
 {macos => scripts/macos}/set_defaults.sh      |  3 +
 set_up_common.sh => scripts/set_up_common.sh  |  5 +-
 scripts/uninstall.sh                          | 23 ++++++
 uninstall.sh                                  | 12 ----
 42 files changed, 144 insertions(+), 93 deletions(-)
 rename .aliases => common/.aliases (100%)
 rename {nvim => common/.config/nvim}/init.lua (100%)
 rename {nvim => common/.config/nvim}/lazy-lock.json (98%)
 rename {nvim => common/.config/nvim}/lua/common.lua (100%)
 rename {nvim => common/.config/nvim}/lua/config_plugins/gitsigns.lua (100%)
 rename {nvim => common/.config/nvim}/lua/config_plugins/lsp-zero.lua (100%)
 rename {nvim => common/.config/nvim}/lua/config_plugins/telescope.lua (100%)
 rename {nvim => common/.config/nvim}/lua/config_plugins/treesitter.lua (100%)
 rename {nvim => common/.config/nvim}/lua/debugging.lua (100%)
 rename {nvim => common/.config/nvim}/lua/ftplugin.lua (100%)
 rename {nvim => common/.config/nvim}/lua/keymaps.lua (100%)
 rename {nvim => common/.config/nvim}/lua/overseer/template/user/populate_scripts.lua (100%)
 rename {nvim => common/.config/nvim}/lua/overseer/template/user/run_script.lua (100%)
 rename {nvim => common/.config/nvim}/lua/overseer/template/user/run_script_with_args.lua (100%)
 rename {nvim => common/.config/nvim}/lua/p.lua (100%)
 rename {nvim => common/.config/nvim}/lua/plugins.lua (100%)
 rename {nvim => common/.config/nvim}/lua/settings.lua (100%)
 rename {nvim => common/.config/nvim}/plugin/filetypes.lua (100%)
 rename {nvim => common/.config/nvim}/snippets/global.code-snippets (100%)
 rename {nvim => common/.config/nvim}/snippets/markdown.json (100%)
 rename {nvim => common/.config/nvim}/snippets/package.json (100%)
 rename {nvim => common/.config/nvim}/snippets/python.json (100%)
 rename {nvim => common/.config/nvim}/snippets/shellscript.json (100%)
 rename .p10k.zsh => common/.p10k.zsh (100%)
 rename .tmux.conf => common/.tmux.conf (100%)
 rename .wezterm.lua => common/.wezterm.lua (95%)
 create mode 120000 debian/clangd
 delete mode 100755 install.sh
 create mode 100644 macos/.unison/default.prf
 create mode 120000 macos/Library/Preferences/clangd
 rename {clangd => redundant/clangd}/config.yaml (100%)
 rename set_up_debian_dev.sh => scripts/debian/install.sh (97%)
 rename set_up_debian.sh => scripts/debian/install_min.sh (98%)
 create mode 100755 scripts/install.sh
 rename {macos => scripts/macos}/install.sh (74%)
 rename {macos => scripts/macos}/set_defaults.sh (96%)
 rename set_up_common.sh => scripts/set_up_common.sh (93%)
 create mode 100755 scripts/uninstall.sh
 delete mode 100755 uninstall.sh

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index f101145..7889fed 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -22,13 +22,7 @@ jobs:
           token: ${{ secrets.PAT }}
           submodules: true
 
-      - name: Run setup
+      - name: Test setup
         run: |
-          ./install.sh
-          if [[ "$RUNNER_OS" == "Linux" ]]; then
-            ./set_up_debian.sh
-            ./set_up_debian_dev.sh --optional
-          elif [[ "$RUNNER_OS" == "macOS" ]]; then
-            ./macos/install.sh
-            ./macos/set_defaults.sh --optional
-          fi
+          ./scripts/install.sh
+          ./scripts/uninstall.sh
diff --git a/.gitignore b/.gitignore
index f140c86..66999a4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1 @@
-nvim/lua/machine_settings.lua
+common/.config/nvim/lua/machine_settings.lua
diff --git a/.aliases b/common/.aliases
similarity index 100%
rename from .aliases
rename to common/.aliases
diff --git a/nvim/init.lua b/common/.config/nvim/init.lua
similarity index 100%
rename from nvim/init.lua
rename to common/.config/nvim/init.lua
diff --git a/nvim/lazy-lock.json b/common/.config/nvim/lazy-lock.json
similarity index 98%
rename from nvim/lazy-lock.json
rename to common/.config/nvim/lazy-lock.json
index 0104043..013d5a1 100644
--- a/nvim/lazy-lock.json
+++ b/common/.config/nvim/lazy-lock.json
@@ -70,7 +70,7 @@
   "plenary.nvim": { "branch": "master", "commit": "2d9b06177a975543726ce5c73fca176cedbffe9d" },
   "promise-async": { "branch": "main", "commit": "119e8961014c9bfaf1487bf3c2a393d254f337e2" },
   "quicker.nvim": { "branch": "master", "commit": "183041a46d6c908eefb1c23ea02cce9c8f41256e" },
-  "render-markdown.nvim": { "branch": "main", "commit": "0986638b381a4b01eb108bb946f3a67a9eb3d0ec" },
+  "render-markdown.nvim": { "branch": "main", "commit": "67288febca78b7aac8fae9543ef8980237e27d2a" },
   "spaceless.nvim": { "branch": "main", "commit": "8d46bc098dba18d4e19bce89bf19aab5007ef767" },
   "stickybuf.nvim": { "branch": "master", "commit": "183b9569bef78f44b17c078214f7d731f19cbefe" },
   "substitute.nvim": { "branch": "main", "commit": "17ffaeb5a1dc2dbef39cf0865d8a4b6000836714" },
diff --git a/nvim/lua/common.lua b/common/.config/nvim/lua/common.lua
similarity index 100%
rename from nvim/lua/common.lua
rename to common/.config/nvim/lua/common.lua
diff --git a/nvim/lua/config_plugins/gitsigns.lua b/common/.config/nvim/lua/config_plugins/gitsigns.lua
similarity index 100%
rename from nvim/lua/config_plugins/gitsigns.lua
rename to common/.config/nvim/lua/config_plugins/gitsigns.lua
diff --git a/nvim/lua/config_plugins/lsp-zero.lua b/common/.config/nvim/lua/config_plugins/lsp-zero.lua
similarity index 100%
rename from nvim/lua/config_plugins/lsp-zero.lua
rename to common/.config/nvim/lua/config_plugins/lsp-zero.lua
diff --git a/nvim/lua/config_plugins/telescope.lua b/common/.config/nvim/lua/config_plugins/telescope.lua
similarity index 100%
rename from nvim/lua/config_plugins/telescope.lua
rename to common/.config/nvim/lua/config_plugins/telescope.lua
diff --git a/nvim/lua/config_plugins/treesitter.lua b/common/.config/nvim/lua/config_plugins/treesitter.lua
similarity index 100%
rename from nvim/lua/config_plugins/treesitter.lua
rename to common/.config/nvim/lua/config_plugins/treesitter.lua
diff --git a/nvim/lua/debugging.lua b/common/.config/nvim/lua/debugging.lua
similarity index 100%
rename from nvim/lua/debugging.lua
rename to common/.config/nvim/lua/debugging.lua
diff --git a/nvim/lua/ftplugin.lua b/common/.config/nvim/lua/ftplugin.lua
similarity index 100%
rename from nvim/lua/ftplugin.lua
rename to common/.config/nvim/lua/ftplugin.lua
diff --git a/nvim/lua/keymaps.lua b/common/.config/nvim/lua/keymaps.lua
similarity index 100%
rename from nvim/lua/keymaps.lua
rename to common/.config/nvim/lua/keymaps.lua
diff --git a/nvim/lua/overseer/template/user/populate_scripts.lua b/common/.config/nvim/lua/overseer/template/user/populate_scripts.lua
similarity index 100%
rename from nvim/lua/overseer/template/user/populate_scripts.lua
rename to common/.config/nvim/lua/overseer/template/user/populate_scripts.lua
diff --git a/nvim/lua/overseer/template/user/run_script.lua b/common/.config/nvim/lua/overseer/template/user/run_script.lua
similarity index 100%
rename from nvim/lua/overseer/template/user/run_script.lua
rename to common/.config/nvim/lua/overseer/template/user/run_script.lua
diff --git a/nvim/lua/overseer/template/user/run_script_with_args.lua b/common/.config/nvim/lua/overseer/template/user/run_script_with_args.lua
similarity index 100%
rename from nvim/lua/overseer/template/user/run_script_with_args.lua
rename to common/.config/nvim/lua/overseer/template/user/run_script_with_args.lua
diff --git a/nvim/lua/p.lua b/common/.config/nvim/lua/p.lua
similarity index 100%
rename from nvim/lua/p.lua
rename to common/.config/nvim/lua/p.lua
diff --git a/nvim/lua/plugins.lua b/common/.config/nvim/lua/plugins.lua
similarity index 100%
rename from nvim/lua/plugins.lua
rename to common/.config/nvim/lua/plugins.lua
diff --git a/nvim/lua/settings.lua b/common/.config/nvim/lua/settings.lua
similarity index 100%
rename from nvim/lua/settings.lua
rename to common/.config/nvim/lua/settings.lua
diff --git a/nvim/plugin/filetypes.lua b/common/.config/nvim/plugin/filetypes.lua
similarity index 100%
rename from nvim/plugin/filetypes.lua
rename to common/.config/nvim/plugin/filetypes.lua
diff --git a/nvim/snippets/global.code-snippets b/common/.config/nvim/snippets/global.code-snippets
similarity index 100%
rename from nvim/snippets/global.code-snippets
rename to common/.config/nvim/snippets/global.code-snippets
diff --git a/nvim/snippets/markdown.json b/common/.config/nvim/snippets/markdown.json
similarity index 100%
rename from nvim/snippets/markdown.json
rename to common/.config/nvim/snippets/markdown.json
diff --git a/nvim/snippets/package.json b/common/.config/nvim/snippets/package.json
similarity index 100%
rename from nvim/snippets/package.json
rename to common/.config/nvim/snippets/package.json
diff --git a/nvim/snippets/python.json b/common/.config/nvim/snippets/python.json
similarity index 100%
rename from nvim/snippets/python.json
rename to common/.config/nvim/snippets/python.json
diff --git a/nvim/snippets/shellscript.json b/common/.config/nvim/snippets/shellscript.json
similarity index 100%
rename from nvim/snippets/shellscript.json
rename to common/.config/nvim/snippets/shellscript.json
diff --git a/.p10k.zsh b/common/.p10k.zsh
similarity index 100%
rename from .p10k.zsh
rename to common/.p10k.zsh
diff --git a/.tmux.conf b/common/.tmux.conf
similarity index 100%
rename from .tmux.conf
rename to common/.tmux.conf
diff --git a/.wezterm.lua b/common/.wezterm.lua
similarity index 95%
rename from .wezterm.lua
rename to common/.wezterm.lua
index bb7850f..32b274a 100644
--- a/.wezterm.lua
+++ b/common/.wezterm.lua
@@ -32,11 +32,17 @@ config.font_size = 11
 if wezterm.target_triple == 'aarch64-apple-darwin' then
   config.window_close_confirmation = 'NeverPrompt'
   config.window_decorations = "RESIZE"
-  config.font = wezterm.font{
+  local weight = "Medium"
+  config.font_size = 12
+  if wezterm.hostname() == "Jedrzejs-Mac-mini.local" then
+    config.font_size = 13
+    weight = "Bold"
+  end
+  config.font = wezterm.font {
     family = 'Monaco Nerd Font',
     harfbuzz_features = { 'ss07', 'calt', 'liga=0' },
+    weight = weight,
   }
-  config.font_size = 12
   config.native_macos_fullscreen_mode = true
 else
   -- disable the window title bar
diff --git a/debian/clangd b/debian/clangd
new file mode 120000
index 0000000..8462b08
--- /dev/null
+++ b/debian/clangd
@@ -0,0 +1 @@
+../redundant/clangd
\ No newline at end of file
diff --git a/dotfiles_private b/dotfiles_private
index 241c529..e94ab1a 160000
--- a/dotfiles_private
+++ b/dotfiles_private
@@ -1 +1 @@
-Subproject commit 241c5296e5a27c99f1e906d969faf4a0e8f28585
+Subproject commit e94ab1ab350fa00f5b5e1b561655d0b0a12ffb73
diff --git a/install.sh b/install.sh
deleted file mode 100755
index 8bc5cfb..0000000
--- a/install.sh
+++ /dev/null
@@ -1,53 +0,0 @@
-#!/usr/bin/env bash
-
-set -x
-set -e
-
-SCRIPT_DIR=$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" &>/dev/null && pwd)
-
-copy=false
-if [[ $1 == "--copy" ]]; then
-  copy=true
-fi
-
-function add() {
-  rm -r "$2" || true
-  if [[ $copy == true ]]; then
-    cp -r "$1" "$2"
-  else
-    ln -s "$1" "$2"
-  fi
-}
-
-# nvim
-add "$SCRIPT_DIR/nvim" "$HOME/.config/nvim"
-
-# clangd
-if [[ "$OSTYPE" == "linux-gnu"* ]]; then
-  add "$SCRIPT_DIR/clangd" "$HOME/.config/clangd"
-elif [[ "$OSTYPE" == "darwin"* ]]; then
-  macos_clangd_path="$HOME/Library/Preferences/clangd"
-  mkdir -p "$macos_clangd_path"
-  add "$SCRIPT_DIR/clangd" "$macos_clangd_path"
-else
-  echo "OS type unknown. Exiting."
-  exit 1
-fi
-
-# tmux
-add "$SCRIPT_DIR/.tmux.conf" "$HOME/.tmux.conf"
-
-# .wezterm
-add "$SCRIPT_DIR/.wezterm.lua" "$HOME/.wezterm.lua"
-
-# snippets
-if [[ "$OSTYPE" == "linux-gnu"* ]]; then
-  vscode_snippets_path="$HOME/.config/Code/User/snippets"
-elif [[ "$OSTYPE" == "darwin"* ]]; then
-  vscode_snippets_path="$HOME/Library/Application Support/Code/User/snippets"
-else
-  echo "OS type unknown. Exiting."
-  exit 1
-fi
-mkdir -p "$(dirname "${vscode_snippets_path}")"
-add "$SCRIPT_DIR/nvim/snippets" "${vscode_snippets_path}"
diff --git a/macos/.unison/default.prf b/macos/.unison/default.prf
new file mode 100644
index 0000000..29b36b7
--- /dev/null
+++ b/macos/.unison/default.prf
@@ -0,0 +1,17 @@
+# roots define root directories for syncing between
+root = /Users/jedrzej/Library/Mobile Documents/iCloud~md~obsidian/Documents/
+root = /Users/jedrzej/Dropbox/ObsidianVaults/
+
+# dirs to sync
+path=Personal
+
+# don't ask for confirmation
+auto=true
+batch=true
+# sync ownership and group
+owner=true
+group=true
+# for safety
+confirmbigdel=true
+# prefer newer in case of conflicts
+prefer=newer
diff --git a/macos/Library/Preferences/clangd b/macos/Library/Preferences/clangd
new file mode 120000
index 0000000..c2e4d21
--- /dev/null
+++ b/macos/Library/Preferences/clangd
@@ -0,0 +1 @@
+../../../redundant/clangd
\ No newline at end of file
diff --git a/clangd/config.yaml b/redundant/clangd/config.yaml
similarity index 100%
rename from clangd/config.yaml
rename to redundant/clangd/config.yaml
diff --git a/set_up_debian_dev.sh b/scripts/debian/install.sh
similarity index 97%
rename from set_up_debian_dev.sh
rename to scripts/debian/install.sh
index 7c5602d..34e95f9 100755
--- a/set_up_debian_dev.sh
+++ b/scripts/debian/install.sh
@@ -2,6 +2,7 @@
 set -e
 
 SCRIPT_DIR=$(dirname "$0")
+ROOT_DIR=$(realpath "${SCRIPT_DIR}/../..")
 
 # Initialize a flag
 optional_provided=false
@@ -19,7 +20,7 @@ function setup_nerdfont() {
   git clone https://github.com/epk/SF-Mono-Nerd-Font.git /tmp/SF-Mono-Nerd-Font
   cp /tmp/SF-Mono-Nerd-Font/*.otf ~/.local/share/fonts/
   rm -rf /tmp/SF-Mono-Nerd-Font
-  cp "$SCRIPT_DIR"/dotfiles_private/fonts/* ~/.local/share/fonts/
+  cp "$ROOT_DIR"/dotfiles_private/fonts/* ~/.local/share/fonts/
   rm ~/.local/share/fonts/MonacoNerdFont-Regular.ttf
   fc-cache -f
 }
@@ -27,7 +28,6 @@ function setup_nerdfont() {
 function setup_powerlevel10k() {
   git clone --depth=1 https://github.com/romkatv/powerlevel10k.git "${ZSH_CUSTOM:-$HOME/.oh-my-zsh/custom}/themes/powerlevel10k" || true
   sed -i 's/ZSH_THEME=\"robbyrussell\"/ZSH_THEME=\"powerlevel10k\/powerlevel10k\"/g' "$HOME/.zshrc"
-  cp "$SCRIPT_DIR/.p10k.zsh" "$HOME/"
 }
 
 function setup_sublimetext() {
diff --git a/set_up_debian.sh b/scripts/debian/install_min.sh
similarity index 98%
rename from set_up_debian.sh
rename to scripts/debian/install_min.sh
index a9f963c..61a6869 100755
--- a/set_up_debian.sh
+++ b/scripts/debian/install_min.sh
@@ -1,6 +1,8 @@
 #!/bin/bash
 set -e
 
+SCRIPT_DIR=$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" &>/dev/null && pwd)
+
 function get_highest_tag_version() {
   git tag | sort -V | tail -n 1
 }
@@ -265,7 +267,7 @@ ln -s $(which fdfind) $HOME/.local/bin/fd || true
 sudo apt install ripgrep -y || true
 
 # run set_up_common.sh
-./set_up_common.sh
+"$SCRIPT_DIR/../set_up_common.sh"
 
 if command -v doit &>/dev/null; then
   pipx install thefuck
@@ -338,5 +340,3 @@ install_direnv
 install_delta
 
 install_gh
-
-echo "Done"
diff --git a/scripts/install.sh b/scripts/install.sh
new file mode 100755
index 0000000..b8a5a2e
--- /dev/null
+++ b/scripts/install.sh
@@ -0,0 +1,72 @@
+#!/usr/bin/env bash
+
+set -x
+set -e
+
+SCRIPT_DIR=$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" &>/dev/null && pwd)
+ROOT_DIR=$(dirname "$SCRIPT_DIR")
+
+copy=false
+if [[ $1 == "--copy" ]]; then
+  copy=true
+fi
+
+function add() {
+  rm -r "$2" || true
+  if [[ $copy == true ]]; then
+    cp -r "$1" "$2"
+  else
+    ln -s "$1" "$2"
+  fi
+}
+
+# snippets
+if [[ "$OSTYPE" == "linux-gnu"* ]]; then
+  vscode_snippets_path="$HOME/.config/Code/User/snippets"
+elif [[ "$OSTYPE" == "darwin"* ]]; then
+  vscode_snippets_path="$HOME/Library/Application Support/Code/User/snippets"
+else
+  echo "OS type unknown. Exiting."
+  exit 1
+fi
+mkdir -p "$(dirname "${vscode_snippets_path}")"
+add "$SCRIPT_DIR/nvim/snippets" "${vscode_snippets_path}"
+
+cd "$ROOT_DIR"
+
+if ! [ -x "$(command -v stow)" ]; then
+  if [[ "$OSTYPE" == "linux-gnu"* ]]; then
+    sudo apt install stow -y
+  elif [[ "$OSTYPE" == "darwin"* ]]; then
+    if ! [ -x "$(command -v brew)" ]; then
+      /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"
+    fi
+    brew install stow
+  else
+      echo "Unsupported OS"
+  fi
+fi
+
+# Stow common config
+stow -t ~ common
+cd dotfiles_private/stow
+stow -t ~ common_private
+cd ../..
+
+# Stow platform-specific config
+if [[ "$OSTYPE" == "linux-gnu"* ]]; then
+    stow -t ~ debian
+    cd dotfiles_private/stow
+    stow -t ~ debian_private
+    cd ../..
+    scripts/debian/install_min.sh
+    scripts/debian/install.sh --optional
+elif [[ "$OSTYPE" == "darwin"* ]]; then
+    stow -t ~ macos
+    cd dotfiles_private/stow
+    stow -t ~ macos_private
+    cd ../..
+    scripts/macos/install.sh
+else
+    echo "Unsupported OS"
+fi
diff --git a/macos/install.sh b/scripts/macos/install.sh
similarity index 74%
rename from macos/install.sh
rename to scripts/macos/install.sh
index dd44936..130af54 100755
--- a/macos/install.sh
+++ b/scripts/macos/install.sh
@@ -2,9 +2,9 @@
 set -e
 
 SCRIPT_DIR=$(dirname $0)
-ROOT_DIR=$(dirname "$SCRIPT_DIR")
+ROOT_DIR=$(realpath "${SCRIPT_DIR}/../..")
 
-$ROOT_DIR/set_up_common.sh
+$SCRIPT_DIR/../set_up_common.sh
 
 KEYBOARD_SOURCE_PATH="$HOME/Library/Mobile Documents/com~apple~CloudDocs/Random/Keyboard Layouts/Polish-German.bundle"
 KEYBOARD_TARGET_PATH="$HOME/Library/Keyboard Layouts/Polish-German.bundle"
@@ -20,7 +20,7 @@ if ! grep -Fxq "PasswordAuthentication no" "$SSH_CONFIG_PATH"; then
   echo "ChallengeResponseAuthentication no" | sudo tee -a "$SSH_CONFIG_PATH"
 fi
 
-# karabiner config
-rm "$HOME/.config/karabiner.edn"
-ln -s "$ROOT_DIR/dotfiles_private/karabiner.edn" "$HOME/.config/karabiner.edn"
-goku || echo "goku not installed. Install with brew and run 'goku' when possible."
+# run goku to install karabiner config
+goku > /dev/null || echo "goku not installed. Install with brew and run 'goku' when possible."
+
+$SCRIPT_DIR/set_defaults.sh
diff --git a/macos/set_defaults.sh b/scripts/macos/set_defaults.sh
similarity index 96%
rename from macos/set_defaults.sh
rename to scripts/macos/set_defaults.sh
index 3187bb6..961df6c 100755
--- a/macos/set_defaults.sh
+++ b/scripts/macos/set_defaults.sh
@@ -41,8 +41,11 @@ defaults write com.apple.desktopservices DSDontWriteUSBStores -bool true
 # General UI/UX                                                               #
 ###############################################################################
 
+echo "Disabling startup sound effects, password will be required"
 # Disable the sound effects on boot
+set -x
 sudo nvram StartupMute=%01
+set +x
 
 # Disable crash report windows
 # https://stackoverflow.com/questions/6084497/silencing-osx-crash-report-window
diff --git a/set_up_common.sh b/scripts/set_up_common.sh
similarity index 93%
rename from set_up_common.sh
rename to scripts/set_up_common.sh
index a937d94..42b1ae9 100755
--- a/set_up_common.sh
+++ b/scripts/set_up_common.sh
@@ -1,10 +1,12 @@
 #!/bin/bash
+set -e
 
 if [ -d ~/.oh-my-zsh ]; then
   echo "oh-my-zsh is installed"
 else
   echo "installing oh-my-zsh"
   sh -c "$(curl -fsSL https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh)" "" --unattended
+  echo "Changing default shell, password required"
   sudo chsh -s "$(which zsh)" "$(whoami)" || true
   git clone https://github.com/zsh-users/zsh-syntax-highlighting.git "${ZSH_CUSTOM:-~/.oh-my-zsh/custom}"/plugins/zsh-syntax-highlighting
   git clone https://github.com/MenkeTechnologies/zsh-expand.git "${ZSH_CUSTOM:-~/.oh-my-zsh/custom}"/plugins/zsh-expand
@@ -18,9 +20,6 @@ git config --global pull.rebase true
 git config --global user.name "Jedrzej Orbik"
 git config --global user.email Jendker@users.noreply.github.com
 
-# copy the aliases
-SCRIPT_DIR=$(dirname "$0")
-cp "$SCRIPT_DIR/.aliases" ~/.aliases
 grep -qF 'source ~/.aliases' "$HOME/.zshrc" || echo '[ -e ~/.aliases ] && source ~/.aliases' >>"$HOME/.zshrc"
 grep -qxF 'eval "$(direnv hook zsh)"' "$HOME"/.zshrc || echo 'eval "$(direnv hook zsh)"' >>"$HOME/.zshrc"
 mkdir -p ~/.config/direnv
diff --git a/scripts/uninstall.sh b/scripts/uninstall.sh
new file mode 100755
index 0000000..67e2023
--- /dev/null
+++ b/scripts/uninstall.sh
@@ -0,0 +1,23 @@
+#!/usr/bin/env bash
+set -e
+
+# Unstow platform-specific config
+if [[ "$OSTYPE" == "linux-gnu"* ]]; then
+    cd dotfiles_private/stow
+    stow -D -t ~ debian_private
+    cd ../..
+    stow -D -t ~ debian
+elif [[ "$OSTYPE" == "darwin"* ]]; then
+    cd dotfiles_private/stow
+    stow -D -t ~ macos_private
+    cd ../..
+    stow -D -t ~ macos
+else
+    echo "Unsupported OS"
+fi
+
+# Unstow common
+cd dotfiles_private/stow
+stow -D -t ~ common_private
+cd ../..
+stow -D -t ~ common
diff --git a/uninstall.sh b/uninstall.sh
deleted file mode 100755
index ac1255f..0000000
--- a/uninstall.sh
+++ /dev/null
@@ -1,12 +0,0 @@
-#!/usr/bin/env bash
-set -e
-
-rm -rf ~/.config/nvim
-if [[ "$OSTYPE" == "linux-gnu"* ]]; then
-  rm -rf "$HOME/.config/clangd"
-elif [[ "$OSTYPE" == "darwin"* ]]; then
-  rm -rf "$HOME/Library/Preferences/clangd/"
-else
-  echo "OS type unknown. Exiting."
-  exit 1
-fi