From 8d711d36102ae88c429096c740b4d54f09a7c934 Mon Sep 17 00:00:00 2001
From: Prashant Gaurav <pgaurav3@gatech.edu>
Date: Mon, 27 Jun 2011 18:03:36 -0400
Subject: [PATCH] fixed issue 17

---
 gtfold-mfe/src/main.cc     | 13 +++++++------
 gtfold-mfe/src/traceback.c |  2 +-
 2 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/gtfold-mfe/src/main.cc b/gtfold-mfe/src/main.cc
index 5a7f707..280ed9e 100644
--- a/gtfold-mfe/src/main.cc
+++ b/gtfold-mfe/src/main.cc
@@ -243,10 +243,13 @@ int main(int argc, char** argv) {
 	
 	printf("Done.\n\n");
 	printf("Results:\n");
-	printf("- Minimum Free Energy: %12.4f kcal/mol\n", energy/100.00);
+	if (energy >= MAXENG)	
+		printf("- Minimum Free Energy: %12.4f kcal/mol\n", 0.00);
+	else
+		printf("- Minimum Free Energy: %12.4f kcal/mol\n", energy/100.00);
 	printf("- MFE runtime: %9.6f seconds\n", t1);
-	
-	
+
+
 	if (SUBOPT_ENABLED) {	
 		t1 = get_seconds();
 		ss_map_t subopt_data = subopt_traceback(seq.length(), 100.0*suboptDelta);
@@ -263,17 +266,15 @@ int main(int argc, char** argv) {
 	t1 = get_seconds();
 	trace(seq.length(), VERBOSE, UNAMODE, T_MISMATCH);
 	t1 = get_seconds() - t1;
-
+	
 	printf("\n");
 	print_sequence(seq.length());
 	print_structure(seq.length());
 	if (CONS_ENABLED)
 		print_constraints(seq.length());
 
-
 	if (SHAPE_ENABLED && VERBOSE)
 		print_shapeArray(seq.length());
-	
 
 	save_ct_file(outputFile, seq, energy);
 	printf("\nMFE structure saved in .ct format to %s\n", outputFile.c_str());
diff --git a/gtfold-mfe/src/traceback.c b/gtfold-mfe/src/traceback.c
index 1a9511f..6cea549 100644
--- a/gtfold-mfe/src/traceback.c
+++ b/gtfold-mfe/src/traceback.c
@@ -45,7 +45,7 @@ void trace(int len, int vv, int mode, int mismatch) {
 		structure[i] = 0;
 
 	if (W[len] >= MAXENG) {
-		printf("\n No Structure ");
+		printf("- No Structure \n");
 		return;
 	}