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.dockstore.yml
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.dockstore.yml
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# Refers to the version 1.2 of the .dockstore.yml schema
version: 1.2
# An array of workflows.
workflows:
# The optional workflow name for a workflow, which may only consist of alphanumerics
# and internal underscores and hyphens, but no spaces or other characters. Names may not exceed 256 characters.
# If using a .dockstore.yml with multiple workflows, this field is required
# to uniquely identify workflows in the repository.
#
# It should be noted that having the name come first is an arbitrary decision.
# You could use subclass instead, for instance. Provided arrays are not broken
# up, the order of fields within a .dockstore.yml is not important.
- name: CAMRA-Assembly_Quality_Control-WDL
# The descriptor language used for the workflow. CWL, WDL, NFL (Nextflow), or GALAXY.
# This cannot be changed once the workflow is registered.
subclass: WDL
# Workflow-wide setting that will affect ALL branches/tags; only set this as needed in a main branch.
# Set to true to publish an unpublished workflow, or false to unpublish a published workflow.
# Omitting the publish setting leaves the publish-state unchanged (recommended for all non-primary branches).
# publish: <Boolean>
# The absolute path to the primary descriptor file in the Git repository.
# - For CWL, the primary descriptor is a .cwl file.
# - For WDL, the primary descriptor is a .wdl file.
# - For Galaxy, the primary descriptor is a .ga file.
# - Nextflow differs from these as the primary descriptor is a nextflow.config file.
primaryDescriptorPath: /Workflows/CAMRA_QC_WF.wdl
# An optional path to a workflow-specific readme in the Git repository. If not provided, Dockstore will show
# the readme.md present at the root of the Git repository if it is present.
# If you have multiple workflows in a single Git repository, it is recommend to give each one a readme.
readMePath: /README.md
# A boolean that will change the default version to be displayed on Dockstore. Default: False.
# A value of true will automatically display the latest tag updated as default.
# A value of false will retain the default version that has been specified via the Dockstore UI.
latestTagAsDefault: True
# An optional array of authorship information.
# Note that if orcid is present, then all other fields will be ignored, as information will be taken from orcid.
# If orcid is not present, make sure to at a minimum include the name field for each author.
authors:
- orcid: 0009-0008-5199-2990 # Daniella Matute
- name: Andrew LaPointe
email: [email protected]
# An optional array of absolute paths to test parameter files in the Git repository.
# For example...
# testParameterFiles:
# - /null-model/null-model.json
# - /null-model/null-model-binary.json
# testParameterFiles: <String Array>
# The optional filters section allow specifying sets of Git branches and tags to include for the workflow.
# If no filters are given, all branches and tags are included.
# Branches and tags are arrays of pattern-strings.
# Pattern-strings use Unix-style Glob syntax by default (Ex: `develop`, `myworkflow/**`)
# https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/nio/file/FileSystem.html#getPathMatcher(java.lang.String)
# or RegEx when the string is surrounded by / (Ex: `/develop/`, `/myworkflow\/.*/`).
# filters:
# branches: [ /.*dockstore/ ]
# tags: [ /v.*dockstore/ ]
branches:
- main
- name: CAMRA-Genome_Assembly-WDL
subclass: WDL
primaryDescriptorPath: /Workflows/CAMRA_ASM_WF.wdl
readMePath: /README.md
latestTagAsDefault: True
authors:
- orcid: 0009-0008-5199-2990 #Daniella Matute
- name: Andrew LaPointe
email: [email protected]
- name: CAMRA-Genome_Annotation-WDL
subclass: WDL
primaryDescriptorPath: /Workflows/CAMRA_ANNOT_WF.wdl
readMePath: /README.md
latestTagAsDefault: True
authors:
- orcid: 0009-0008-5199-2990 #Daniella Matute
- name: Andrew LaPointe
email: [email protected]
- name: CAMRA-AMR_Detection-WDL
subclass: WDL
primaryDescriptorPath: /Workflows/CAMRA_AMR_WF.wdl
readMePath: /README.md
latestTagAsDefault: True
authors:
- orcid: 0009-0008-5199-2990 #Daniella Matute
branches:
- main
- term_consolidation