From 947cb8b65895f23069479cb8ace3fb1899ff0687 Mon Sep 17 00:00:00 2001 From: David Johnson Date: Mon, 5 Jun 2017 15:40:11 +0100 Subject: [PATCH 1/4] Update known issues for latest release in documentation --- docs/knownissues.rst | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/docs/knownissues.rst b/docs/knownissues.rst index 7586ae20..f8ff5fed 100644 --- a/docs/knownissues.rst +++ b/docs/knownissues.rst @@ -2,6 +2,11 @@ Known issues ############ +isatools v0.8 package +--------------------- +- Issues #153 is still outstanding, as per below; new issues #205 (json2isatab conversion issue), #208 and #210 (ISA-Tab reader issues) +- SRA/ENA importer and Biocrates importer relies on XSLT2 processing only available with SAXON and requires .jar file to run + isatools v0.7 package --------------------- - Issues #101, #153 are still outstanding, as per below From c56d2ffc76c9e0c74d93c1b1a41d99f23fbe731d Mon Sep 17 00:00:00 2001 From: Philippe Rocca-Serra Date: Wed, 7 Jun 2017 14:17:01 +0100 Subject: [PATCH 2/4] fix and examples --- isatools/create/a_mp_FIA_negative_ms.txt | 49 +++++++++ isatools/create/a_mp_FIA_positive_ms.txt | 73 ++++++++++++++ isatools/create/a_mp_LC_negative_ms.txt | 49 +++++++++ isatools/create/a_mp_LC_positive_ms.txt | 49 +++++++++ isatools/create/a_tp_ngs.txt | 121 +++++++++++++++++++++++ isatools/create/i_investigation.txt | 93 +++++++++++++++++ isatools/create/s_study.txt | 49 +++++++++ isatools/create/study_design.py | 6 +- 8 files changed, 487 insertions(+), 2 deletions(-) create mode 100644 isatools/create/a_mp_FIA_negative_ms.txt create mode 100644 isatools/create/a_mp_FIA_positive_ms.txt create mode 100644 isatools/create/a_mp_LC_negative_ms.txt create mode 100644 isatools/create/a_mp_LC_positive_ms.txt create mode 100644 isatools/create/a_tp_ngs.txt create mode 100644 isatools/create/i_investigation.txt create mode 100644 isatools/create/s_study.txt diff --git a/isatools/create/a_mp_FIA_negative_ms.txt b/isatools/create/a_mp_FIA_negative_ms.txt new file mode 100644 index 00000000..6c472e83 --- /dev/null +++ b/isatools/create/a_mp_FIA_negative_ms.txt @@ -0,0 +1,49 @@ +Sample Name Protocol REF Date Performer Extract Name Protocol REF Date Performer MS Assay Name Parameter Value[injection mode] Parameter Value[mass spectrometry instrument] Parameter Value[scan polarity] Parameter Value[randomized run order] Raw Spectral Data File +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652026 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 FIA-negative mass spectrometry 2017-06-07 14:15:07.652060 louis assay-name-24_platform-FIA_run-0 FIA Agilent QTOF negative 33 acquired-data-24_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652026 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 FIA-negative mass spectrometry 2017-06-07 14:15:07.652132 louis assay-name-24_platform-FIA_run-1 FIA Agilent QTOF negative 4 acquired-data-24_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652212 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 FIA-negative mass spectrometry 2017-06-07 14:15:07.652235 louis assay-name-26_platform-FIA_run-0 FIA Agilent QTOF negative 15 acquired-data-26_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652212 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 FIA-negative mass spectrometry 2017-06-07 14:15:07.652303 louis assay-name-26_platform-FIA_run-1 FIA Agilent QTOF negative 59 acquired-data-26_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652381 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 FIA-negative mass spectrometry 2017-06-07 14:15:07.652541 louis assay-name-28_platform-FIA_run-1 FIA Agilent QTOF negative 24 acquired-data-28_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652381 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 FIA-negative mass spectrometry 2017-06-07 14:15:07.652407 louis assay-name-28_platform-FIA_run-0 FIA Agilent QTOF negative 80 acquired-data-28_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649309 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 FIA-negative mass spectrometry 2017-06-07 14:15:07.649387 louis assay-name-0_platform-FIA_run-0 FIA Agilent QTOF negative 64 acquired-data-0_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649309 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 FIA-negative mass spectrometry 2017-06-07 14:15:07.649529 louis assay-name-0_platform-FIA_run-1 FIA Agilent QTOF negative 25 acquired-data-0_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649657 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 FIA-negative mass spectrometry 2017-06-07 14:15:07.649719 louis assay-name-2_platform-FIA_run-0 FIA Agilent QTOF negative 46 acquired-data-2_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649657 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 FIA-negative mass spectrometry 2017-06-07 14:15:07.649845 louis assay-name-2_platform-FIA_run-1 FIA Agilent QTOF negative 52 acquired-data-2_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649976 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 FIA-negative mass spectrometry 2017-06-07 14:15:07.650136 louis assay-name-4_platform-FIA_run-1 FIA Agilent QTOF negative 85 acquired-data-4_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.649976 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 FIA-negative mass spectrometry 2017-06-07 14:15:07.650033 louis assay-name-4_platform-FIA_run-0 FIA Agilent QTOF negative 6 acquired-data-4_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651110 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 FIA-negative mass spectrometry 2017-06-07 14:15:07.651185 louis assay-name-12_platform-FIA_run-0 FIA Agilent QTOF negative 34 acquired-data-12_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651110 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 FIA-negative mass spectrometry 2017-06-07 14:15:07.651282 louis assay-name-12_platform-FIA_run-1 FIA Agilent QTOF negative 95 acquired-data-12_platform-FIA_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651363 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 FIA-negative mass spectrometry 2017-06-07 14:15:07.651379 louis assay-name-14_platform-FIA_run-0 FIA Agilent QTOF negative 53 acquired-data-14_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651363 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 FIA-negative mass spectrometry 2017-06-07 14:15:07.651421 louis assay-name-14_platform-FIA_run-1 FIA Agilent QTOF negative 5 acquired-data-14_platform-FIA_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651467 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 FIA-negative mass spectrometry 2017-06-07 14:15:07.651478 louis assay-name-16_platform-FIA_run-0 FIA Agilent QTOF negative 83 acquired-data-16_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651467 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 FIA-negative mass spectrometry 2017-06-07 14:15:07.651563 louis assay-name-16_platform-FIA_run-1 FIA Agilent QTOF negative 69 acquired-data-16_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653500 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 FIA-negative mass spectrometry 2017-06-07 14:15:07.653529 louis assay-name-36_platform-FIA_run-0 FIA Agilent QTOF negative 94 acquired-data-36_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653500 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 FIA-negative mass spectrometry 2017-06-07 14:15:07.653589 louis assay-name-36_platform-FIA_run-1 FIA Agilent QTOF negative 2 acquired-data-36_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653716 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 FIA-negative mass spectrometry 2017-06-07 14:15:07.653754 louis assay-name-38_platform-FIA_run-0 FIA Agilent QTOF negative 8 acquired-data-38_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653716 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 FIA-negative mass spectrometry 2017-06-07 14:15:07.653836 louis assay-name-38_platform-FIA_run-1 FIA Agilent QTOF negative 36 acquired-data-38_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653913 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 FIA-negative mass spectrometry 2017-06-07 14:15:07.654095 louis assay-name-40_platform-FIA_run-1 FIA Agilent QTOF negative 87 acquired-data-40_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653913 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 FIA-negative mass spectrometry 2017-06-07 14:15:07.653994 louis assay-name-40_platform-FIA_run-0 FIA Agilent QTOF negative 50 acquired-data-40_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651605 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 FIA-negative mass spectrometry 2017-06-07 14:15:07.651662 louis assay-name-18_platform-FIA_run-1 FIA Agilent QTOF negative 58 acquired-data-18_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651605 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 FIA-negative mass spectrometry 2017-06-07 14:15:07.651619 louis assay-name-18_platform-FIA_run-0 FIA Agilent QTOF negative 71 acquired-data-18_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651705 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 FIA-negative mass spectrometry 2017-06-07 14:15:07.651715 louis assay-name-20_platform-FIA_run-0 FIA Agilent QTOF negative 11 acquired-data-20_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651705 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 FIA-negative mass spectrometry 2017-06-07 14:15:07.651768 louis assay-name-20_platform-FIA_run-1 FIA Agilent QTOF negative 92 acquired-data-20_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651850 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 FIA-negative mass spectrometry 2017-06-07 14:15:07.651921 louis assay-name-22_platform-FIA_run-1 FIA Agilent QTOF negative 40 acquired-data-22_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.651850 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 FIA-negative mass spectrometry 2017-06-07 14:15:07.651875 louis assay-name-22_platform-FIA_run-0 FIA Agilent QTOF negative 55 acquired-data-22_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650410 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 FIA-negative mass spectrometry 2017-06-07 14:15:07.650554 louis assay-name-6_platform-FIA_run-1 FIA Agilent QTOF negative 56 acquired-data-6_platform-FIA_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650410 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 FIA-negative mass spectrometry 2017-06-07 14:15:07.650468 louis assay-name-6_platform-FIA_run-0 FIA Agilent QTOF negative 41 acquired-data-6_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650700 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 FIA-negative mass spectrometry 2017-06-07 14:15:07.650745 louis assay-name-8_platform-FIA_run-0 FIA Agilent QTOF negative 23 acquired-data-8_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650700 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 FIA-negative mass spectrometry 2017-06-07 14:15:07.650853 louis assay-name-8_platform-FIA_run-1 FIA Agilent QTOF negative 91 acquired-data-8_platform-FIA_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650922 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 FIA-negative mass spectrometry 2017-06-07 14:15:07.650943 louis assay-name-10_platform-FIA_run-0 FIA Agilent QTOF negative 93 acquired-data-10_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.650922 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 FIA-negative mass spectrometry 2017-06-07 14:15:07.651014 louis assay-name-10_platform-FIA_run-1 FIA Agilent QTOF negative 48 acquired-data-10_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654184 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 FIA-negative mass spectrometry 2017-06-07 14:15:07.654281 louis assay-name-42_platform-FIA_run-1 FIA Agilent QTOF negative 27 acquired-data-42_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654184 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 FIA-negative mass spectrometry 2017-06-07 14:15:07.654206 louis assay-name-42_platform-FIA_run-0 FIA Agilent QTOF negative 66 acquired-data-42_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654463 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 FIA-negative mass spectrometry 2017-06-07 14:15:07.654575 louis assay-name-44_platform-FIA_run-1 FIA Agilent QTOF negative 54 acquired-data-44_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654463 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 FIA-negative mass spectrometry 2017-06-07 14:15:07.654487 louis assay-name-44_platform-FIA_run-0 FIA Agilent QTOF negative 30 acquired-data-44_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654648 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 FIA-negative mass spectrometry 2017-06-07 14:15:07.654666 louis assay-name-46_platform-FIA_run-0 FIA Agilent QTOF negative 76 acquired-data-46_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.654648 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 FIA-negative mass spectrometry 2017-06-07 14:15:07.654741 louis assay-name-46_platform-FIA_run-1 FIA Agilent QTOF negative 70 acquired-data-46_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652627 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 FIA-negative mass spectrometry 2017-06-07 14:15:07.652651 louis assay-name-30_platform-FIA_run-0 FIA Agilent QTOF negative 79 acquired-data-30_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.652627 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 FIA-negative mass spectrometry 2017-06-07 14:15:07.652912 louis assay-name-30_platform-FIA_run-1 FIA Agilent QTOF negative 1 acquired-data-30_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653000 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 FIA-negative mass spectrometry 2017-06-07 14:15:07.653166 louis assay-name-32_platform-FIA_run-1 FIA Agilent QTOF negative 20 acquired-data-32_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653000 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 FIA-negative mass spectrometry 2017-06-07 14:15:07.653061 louis assay-name-32_platform-FIA_run-0 FIA Agilent QTOF negative 9 acquired-data-32_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653288 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 FIA-negative mass spectrometry 2017-06-07 14:15:07.653434 louis assay-name-34_platform-FIA_run-1 FIA Agilent QTOF negative 3 acquired-data-34_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.653288 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 FIA-negative mass spectrometry 2017-06-07 14:15:07.653334 louis assay-name-34_platform-FIA_run-0 FIA Agilent QTOF negative 84 acquired-data-34_platform-FIA_run-0.mzml.gz diff --git a/isatools/create/a_mp_FIA_positive_ms.txt b/isatools/create/a_mp_FIA_positive_ms.txt new file mode 100644 index 00000000..c78f9844 --- /dev/null +++ b/isatools/create/a_mp_FIA_positive_ms.txt @@ -0,0 +1,73 @@ +Sample Name Protocol REF Date Performer Extract Name Protocol REF Date Performer MS Assay Name Parameter Value[injection mode] Parameter Value[mass spectrometry instrument] Parameter Value[scan polarity] Parameter Value[randomized run order] Raw Spectral Data File +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646029 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 FIA-positive mass spectrometry 2017-06-07 14:15:07.646041 louis assay-name-24_platform-FIA_run-0 FIA Agilent QTOF positive 41 acquired-data-24_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646029 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 FIA-positive mass spectrometry 2017-06-07 14:15:07.646085 louis assay-name-24_platform-FIA_run-1 FIA Agilent QTOF positive 1 acquired-data-24_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676705 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liverextract-25 FIA-positive mass spectrometry 2017-06-07 14:15:07.676719 louis assay-name-25_platform-FIA_run-0 FIA Agilent QTOF positive 41 acquired-data-25_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646126 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 FIA-positive mass spectrometry 2017-06-07 14:15:07.646177 louis assay-name-26_platform-FIA_run-1 FIA Agilent QTOF positive 10 acquired-data-26_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646126 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 FIA-positive mass spectrometry 2017-06-07 14:15:07.646138 louis assay-name-26_platform-FIA_run-0 FIA Agilent QTOF positive 37 acquired-data-26_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676774 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liverextract-27 FIA-positive mass spectrometry 2017-06-07 14:15:07.676788 louis assay-name-27_platform-FIA_run-0 FIA Agilent QTOF positive 39 acquired-data-27_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646218 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 FIA-positive mass spectrometry 2017-06-07 14:15:07.646269 louis assay-name-28_platform-FIA_run-1 FIA Agilent QTOF positive 44 acquired-data-28_platform-FIA_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646218 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 FIA-positive mass spectrometry 2017-06-07 14:15:07.646228 louis assay-name-28_platform-FIA_run-0 FIA Agilent QTOF positive 63 acquired-data-28_platform-FIA_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676828 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#1_liverextract-29 FIA-positive mass spectrometry 2017-06-07 14:15:07.676843 louis assay-name-29_platform-FIA_run-0 FIA Agilent QTOF positive 26 acquired-data-29_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643252 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 FIA-positive mass spectrometry 2017-06-07 14:15:07.643507 louis assay-name-0_platform-FIA_run-1 FIA Agilent QTOF positive 13 acquired-data-0_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643252 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 FIA-positive mass spectrometry 2017-06-07 14:15:07.643329 louis assay-name-0_platform-FIA_run-0 FIA Agilent QTOF positive 24 acquired-data-0_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.675817 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liverextract-1 FIA-positive mass spectrometry 2017-06-07 14:15:07.675843 louis assay-name-1_platform-FIA_run-0 FIA Agilent QTOF positive 38 acquired-data-1_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643607 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 FIA-positive mass spectrometry 2017-06-07 14:15:07.643634 louis assay-name-2_platform-FIA_run-0 FIA Agilent QTOF positive 50 acquired-data-2_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643607 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 FIA-positive mass spectrometry 2017-06-07 14:15:07.643738 louis assay-name-2_platform-FIA_run-1 FIA Agilent QTOF positive 85 acquired-data-2_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.675906 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liverextract-3 FIA-positive mass spectrometry 2017-06-07 14:15:07.675921 louis assay-name-3_platform-FIA_run-0 FIA Agilent QTOF positive 31 acquired-data-3_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643856 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 FIA-positive mass spectrometry 2017-06-07 14:15:07.644010 louis assay-name-4_platform-FIA_run-1 FIA Agilent QTOF positive 79 acquired-data-4_platform-FIA_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.643856 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 FIA-positive mass spectrometry 2017-06-07 14:15:07.643881 louis assay-name-4_platform-FIA_run-0 FIA Agilent QTOF positive 58 acquired-data-4_platform-FIA_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.675971 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liverextract-5 FIA-positive mass spectrometry 2017-06-07 14:15:07.675984 louis assay-name-5_platform-FIA_run-0 FIA Agilent QTOF positive 42 acquired-data-5_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644932 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 FIA-positive mass spectrometry 2017-06-07 14:15:07.645038 louis assay-name-12_platform-FIA_run-1 FIA Agilent QTOF positive 70 acquired-data-12_platform-FIA_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644932 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 FIA-positive mass spectrometry 2017-06-07 14:15:07.644955 louis assay-name-12_platform-FIA_run-0 FIA Agilent QTOF positive 21 acquired-data-12_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676286 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liverextract-13 FIA-positive mass spectrometry 2017-06-07 14:15:07.676301 louis assay-name-13_platform-FIA_run-0 FIA Agilent QTOF positive 36 acquired-data-13_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645137 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 FIA-positive mass spectrometry 2017-06-07 14:15:07.645286 louis assay-name-14_platform-FIA_run-1 FIA Agilent QTOF positive 43 acquired-data-14_platform-FIA_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645137 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 FIA-positive mass spectrometry 2017-06-07 14:15:07.645162 louis assay-name-14_platform-FIA_run-0 FIA Agilent QTOF positive 60 acquired-data-14_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676347 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liverextract-15 FIA-positive mass spectrometry 2017-06-07 14:15:07.676361 louis assay-name-15_platform-FIA_run-0 FIA Agilent QTOF positive 4 acquired-data-15_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645362 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 FIA-positive mass spectrometry 2017-06-07 14:15:07.645424 louis assay-name-16_platform-FIA_run-1 FIA Agilent QTOF positive 38 acquired-data-16_platform-FIA_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645362 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 FIA-positive mass spectrometry 2017-06-07 14:15:07.645378 louis assay-name-16_platform-FIA_run-0 FIA Agilent QTOF positive 77 acquired-data-16_platform-FIA_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676455 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liverextract-17 FIA-positive mass spectrometry 2017-06-07 14:15:07.676470 louis assay-name-17_platform-FIA_run-0 FIA Agilent QTOF positive 24 acquired-data-17_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647041 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 FIA-positive mass spectrometry 2017-06-07 14:15:07.647186 louis assay-name-36_platform-FIA_run-1 FIA Agilent QTOF positive 51 acquired-data-36_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647041 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 FIA-positive mass spectrometry 2017-06-07 14:15:07.647078 louis assay-name-36_platform-FIA_run-0 FIA Agilent QTOF positive 16 acquired-data-36_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677050 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liverextract-37 FIA-positive mass spectrometry 2017-06-07 14:15:07.677095 louis assay-name-37_platform-FIA_run-0 FIA Agilent QTOF positive 43 acquired-data-37_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647283 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 FIA-positive mass spectrometry 2017-06-07 14:15:07.647317 louis assay-name-38_platform-FIA_run-0 FIA Agilent QTOF positive 76 acquired-data-38_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647283 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 FIA-positive mass spectrometry 2017-06-07 14:15:07.647397 louis assay-name-38_platform-FIA_run-1 FIA Agilent QTOF positive 47 acquired-data-38_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677138 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liverextract-39 FIA-positive mass spectrometry 2017-06-07 14:15:07.677150 louis assay-name-39_platform-FIA_run-0 FIA Agilent QTOF positive 46 acquired-data-39_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647470 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 FIA-positive mass spectrometry 2017-06-07 14:15:07.647559 louis assay-name-40_platform-FIA_run-1 FIA Agilent QTOF positive 7 acquired-data-40_platform-FIA_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647470 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 FIA-positive mass spectrometry 2017-06-07 14:15:07.647490 louis assay-name-40_platform-FIA_run-0 FIA Agilent QTOF positive 35 acquired-data-40_platform-FIA_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677221 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liverextract-41 FIA-positive mass spectrometry 2017-06-07 14:15:07.677246 louis assay-name-41_platform-FIA_run-0 FIA Agilent QTOF positive 21 acquired-data-41_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645471 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 FIA-positive mass spectrometry 2017-06-07 14:15:07.645547 louis assay-name-18_platform-FIA_run-1 FIA Agilent QTOF positive 91 acquired-data-18_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645471 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 FIA-positive mass spectrometry 2017-06-07 14:15:07.645484 louis assay-name-18_platform-FIA_run-0 FIA Agilent QTOF positive 82 acquired-data-18_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676519 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liverextract-19 FIA-positive mass spectrometry 2017-06-07 14:15:07.676532 louis assay-name-19_platform-FIA_run-0 FIA Agilent QTOF positive 18 acquired-data-19_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645666 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 FIA-positive mass spectrometry 2017-06-07 14:15:07.645758 louis assay-name-20_platform-FIA_run-1 FIA Agilent QTOF positive 14 acquired-data-20_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645666 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 FIA-positive mass spectrometry 2017-06-07 14:15:07.645681 louis assay-name-20_platform-FIA_run-0 FIA Agilent QTOF positive 6 acquired-data-20_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676579 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liverextract-21 FIA-positive mass spectrometry 2017-06-07 14:15:07.676595 louis assay-name-21_platform-FIA_run-0 FIA Agilent QTOF positive 45 acquired-data-21_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645877 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 FIA-positive mass spectrometry 2017-06-07 14:15:07.645897 louis assay-name-22_platform-FIA_run-0 FIA Agilent QTOF positive 59 acquired-data-22_platform-FIA_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.645877 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 FIA-positive mass spectrometry 2017-06-07 14:15:07.645971 louis assay-name-22_platform-FIA_run-1 FIA Agilent QTOF positive 83 acquired-data-22_platform-FIA_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676643 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liverextract-23 FIA-positive mass spectrometry 2017-06-07 14:15:07.676657 louis assay-name-23_platform-FIA_run-0 FIA Agilent QTOF positive 5 acquired-data-23_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644101 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 FIA-positive mass spectrometry 2017-06-07 14:15:07.644132 louis assay-name-6_platform-FIA_run-0 FIA Agilent QTOF positive 22 acquired-data-6_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644101 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 FIA-positive mass spectrometry 2017-06-07 14:15:07.644241 louis assay-name-6_platform-FIA_run-1 FIA Agilent QTOF positive 5 acquired-data-6_platform-FIA_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676031 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liverextract-7 FIA-positive mass spectrometry 2017-06-07 14:15:07.676048 louis assay-name-7_platform-FIA_run-0 FIA Agilent QTOF positive 3 acquired-data-7_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644335 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 FIA-positive mass spectrometry 2017-06-07 14:15:07.644475 louis assay-name-8_platform-FIA_run-0 FIA Agilent QTOF positive 30 acquired-data-8_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644335 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 FIA-positive mass spectrometry 2017-06-07 14:15:07.644582 louis assay-name-8_platform-FIA_run-1 FIA Agilent QTOF positive 78 acquired-data-8_platform-FIA_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676096 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liverextract-9 FIA-positive mass spectrometry 2017-06-07 14:15:07.676111 louis assay-name-9_platform-FIA_run-0 FIA Agilent QTOF positive 35 acquired-data-9_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644683 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 FIA-positive mass spectrometry 2017-06-07 14:15:07.644730 louis assay-name-10_platform-FIA_run-0 FIA Agilent QTOF positive 11 acquired-data-10_platform-FIA_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.644683 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 FIA-positive mass spectrometry 2017-06-07 14:15:07.644811 louis assay-name-10_platform-FIA_run-1 FIA Agilent QTOF positive 46 acquired-data-10_platform-FIA_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676215 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liverextract-11 FIA-positive mass spectrometry 2017-06-07 14:15:07.676233 louis assay-name-11_platform-FIA_run-0 FIA Agilent QTOF positive 34 acquired-data-11_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647634 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 FIA-positive mass spectrometry 2017-06-07 14:15:07.647814 louis assay-name-42_platform-FIA_run-1 FIA Agilent QTOF positive 88 acquired-data-42_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647634 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 FIA-positive mass spectrometry 2017-06-07 14:15:07.647652 louis assay-name-42_platform-FIA_run-0 FIA Agilent QTOF positive 31 acquired-data-42_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677319 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liverextract-43 FIA-positive mass spectrometry 2017-06-07 14:15:07.677348 louis assay-name-43_platform-FIA_run-0 FIA Agilent QTOF positive 47 acquired-data-43_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647897 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 FIA-positive mass spectrometry 2017-06-07 14:15:07.647935 louis assay-name-44_platform-FIA_run-0 FIA Agilent QTOF positive 75 acquired-data-44_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.647897 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 FIA-positive mass spectrometry 2017-06-07 14:15:07.648023 louis assay-name-44_platform-FIA_run-1 FIA Agilent QTOF positive 57 acquired-data-44_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677400 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liverextract-45 FIA-positive mass spectrometry 2017-06-07 14:15:07.677414 louis assay-name-45_platform-FIA_run-0 FIA Agilent QTOF positive 48 acquired-data-45_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.648142 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 FIA-positive mass spectrometry 2017-06-07 14:15:07.648284 louis assay-name-46_platform-FIA_run-1 FIA Agilent QTOF positive 34 acquired-data-46_platform-FIA_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.648142 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 FIA-positive mass spectrometry 2017-06-07 14:15:07.648180 louis assay-name-46_platform-FIA_run-0 FIA Agilent QTOF positive 17 acquired-data-46_platform-FIA_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.677458 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liverextract-47 FIA-positive mass spectrometry 2017-06-07 14:15:07.677473 louis assay-name-47_platform-FIA_run-0 FIA Agilent QTOF positive 2 acquired-data-47_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646313 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 FIA-positive mass spectrometry 2017-06-07 14:15:07.646404 louis assay-name-30_platform-FIA_run-1 FIA Agilent QTOF positive 68 acquired-data-30_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646313 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 FIA-positive mass spectrometry 2017-06-07 14:15:07.646323 louis assay-name-30_platform-FIA_run-0 FIA Agilent QTOF positive 33 acquired-data-30_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676885 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#1_liverextract-31 FIA-positive mass spectrometry 2017-06-07 14:15:07.676897 louis assay-name-31_platform-FIA_run-0 FIA Agilent QTOF positive 23 acquired-data-31_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646521 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 FIA-positive mass spectrometry 2017-06-07 14:15:07.646618 louis assay-name-32_platform-FIA_run-1 FIA Agilent QTOF positive 61 acquired-data-32_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646521 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 FIA-positive mass spectrometry 2017-06-07 14:15:07.646549 louis assay-name-32_platform-FIA_run-0 FIA Agilent QTOF positive 40 acquired-data-32_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676939 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liverextract-33 FIA-positive mass spectrometry 2017-06-07 14:15:07.676952 louis assay-name-33_platform-FIA_run-0 FIA Agilent QTOF positive 22 acquired-data-33_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646700 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 FIA-positive mass spectrometry 2017-06-07 14:15:07.646818 louis assay-name-34_platform-FIA_run-0 FIA Agilent QTOF positive 89 acquired-data-34_platform-FIA_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.646700 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 FIA-positive mass spectrometry 2017-06-07 14:15:07.646929 louis assay-name-34_platform-FIA_run-1 FIA Agilent QTOF positive 8 acquired-data-34_platform-FIA_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liver metabolite extraction 2017-06-07 14:15:07.676998 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liverextract-35 FIA-positive mass spectrometry 2017-06-07 14:15:07.677011 louis assay-name-35_platform-FIA_run-0 FIA Agilent QTOF positive 9 acquired-data-35_platform-FIA_run-0.mzml.gz diff --git a/isatools/create/a_mp_LC_negative_ms.txt b/isatools/create/a_mp_LC_negative_ms.txt new file mode 100644 index 00000000..4e5c4355 --- /dev/null +++ b/isatools/create/a_mp_LC_negative_ms.txt @@ -0,0 +1,49 @@ +Sample Name Protocol REF Date Performer Extract Name Protocol REF Date Performer MS Assay Name Parameter Value[chromatography instrument] Parameter Value[chromatography column] Parameter Value[elution program] Parameter Value[injection mode] Parameter Value[mass spectrometry instrument] Parameter Value[scan polarity] Parameter Value[randomized run order] Raw Spectral Data File +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.665432 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 LC-negative mass spectrometry 2017-06-07 14:15:07.665490 louis assay-name-24_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 64 acquired-data-24_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.665432 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 LC-negative mass spectrometry 2017-06-07 14:15:07.665688 louis assay-name-24_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 72 acquired-data-24_platform-LC_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.665869 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 LC-negative mass spectrometry 2017-06-07 14:15:07.666120 louis assay-name-26_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 96 acquired-data-26_platform-LC_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.665869 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 LC-negative mass spectrometry 2017-06-07 14:15:07.665917 louis assay-name-26_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 28 acquired-data-26_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.666286 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 LC-negative mass spectrometry 2017-06-07 14:15:07.666420 louis assay-name-28_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 85 acquired-data-28_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.666286 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 LC-negative mass spectrometry 2017-06-07 14:15:07.666575 louis assay-name-28_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 29 acquired-data-28_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660073 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 LC-negative mass spectrometry 2017-06-07 14:15:07.660114 louis assay-name-0_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 43 acquired-data-0_platform-LC_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660073 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 LC-negative mass spectrometry 2017-06-07 14:15:07.660255 louis assay-name-0_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 25 acquired-data-0_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660385 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 LC-negative mass spectrometry 2017-06-07 14:15:07.660542 louis assay-name-2_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 32 acquired-data-2_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660385 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 LC-negative mass spectrometry 2017-06-07 14:15:07.660411 louis assay-name-2_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 7 acquired-data-2_platform-LC_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660671 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 LC-negative mass spectrometry 2017-06-07 14:15:07.660820 louis assay-name-4_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 20 acquired-data-4_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.660671 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 LC-negative mass spectrometry 2017-06-07 14:15:07.660696 louis assay-name-4_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 77 acquired-data-4_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661865 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 LC-negative mass spectrometry 2017-06-07 14:15:07.661993 louis assay-name-12_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 95 acquired-data-12_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661865 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 LC-negative mass spectrometry 2017-06-07 14:15:07.661886 louis assay-name-12_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 58 acquired-data-12_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.662209 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 LC-negative mass spectrometry 2017-06-07 14:15:07.662460 louis assay-name-14_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 62 acquired-data-14_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.662209 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 LC-negative mass spectrometry 2017-06-07 14:15:07.662256 louis assay-name-14_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 66 acquired-data-14_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.662901 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 LC-negative mass spectrometry 2017-06-07 14:15:07.662942 louis assay-name-16_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 41 acquired-data-16_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.662901 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 LC-negative mass spectrometry 2017-06-07 14:15:07.663236 louis assay-name-16_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 87 acquired-data-16_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.668161 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 LC-negative mass spectrometry 2017-06-07 14:15:07.668225 louis assay-name-36_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 19 acquired-data-36_platform-LC_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.668161 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 LC-negative mass spectrometry 2017-06-07 14:15:07.668409 louis assay-name-36_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 9 acquired-data-36_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.668710 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 LC-negative mass spectrometry 2017-06-07 14:15:07.668759 louis assay-name-38_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 76 acquired-data-38_platform-LC_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.668710 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 LC-negative mass spectrometry 2017-06-07 14:15:07.669027 louis assay-name-38_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 24 acquired-data-38_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669216 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 LC-negative mass spectrometry 2017-06-07 14:15:07.669374 louis assay-name-40_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 93 acquired-data-40_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669216 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 LC-negative mass spectrometry 2017-06-07 14:15:07.669244 louis assay-name-40_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 2 acquired-data-40_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.663579 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 LC-negative mass spectrometry 2017-06-07 14:15:07.663683 louis assay-name-18_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 54 acquired-data-18_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.663579 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 LC-negative mass spectrometry 2017-06-07 14:15:07.663960 louis assay-name-18_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 23 acquired-data-18_platform-LC_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.664200 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 LC-negative mass spectrometry 2017-06-07 14:15:07.664243 louis assay-name-20_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 61 acquired-data-20_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.664200 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 LC-negative mass spectrometry 2017-06-07 14:15:07.664601 louis assay-name-20_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 68 acquired-data-20_platform-LC_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.664841 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 LC-negative mass spectrometry 2017-06-07 14:15:07.664922 louis assay-name-22_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 88 acquired-data-22_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.664841 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 LC-negative mass spectrometry 2017-06-07 14:15:07.665179 louis assay-name-22_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 79 acquired-data-22_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661020 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 LC-negative mass spectrometry 2017-06-07 14:15:07.661057 louis assay-name-6_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 10 acquired-data-6_platform-LC_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661020 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 LC-negative mass spectrometry 2017-06-07 14:15:07.661181 louis assay-name-6_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 44 acquired-data-6_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661315 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 LC-negative mass spectrometry 2017-06-07 14:15:07.661474 louis assay-name-8_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 75 acquired-data-8_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661315 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 LC-negative mass spectrometry 2017-06-07 14:15:07.661343 louis assay-name-8_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 18 acquired-data-8_platform-LC_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661607 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 LC-negative mass spectrometry 2017-06-07 14:15:07.661755 louis assay-name-10_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 12 acquired-data-10_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.661607 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 LC-negative mass spectrometry 2017-06-07 14:15:07.661633 louis assay-name-10_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 51 acquired-data-10_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669504 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 LC-negative mass spectrometry 2017-06-07 14:15:07.669654 louis assay-name-42_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 74 acquired-data-42_platform-LC_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669504 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 LC-negative mass spectrometry 2017-06-07 14:15:07.669537 louis assay-name-42_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 60 acquired-data-42_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669843 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 LC-negative mass spectrometry 2017-06-07 14:15:07.669994 louis assay-name-44_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 22 acquired-data-44_platform-LC_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.669843 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 LC-negative mass spectrometry 2017-06-07 14:15:07.669872 louis assay-name-44_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 69 acquired-data-44_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.670155 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 LC-negative mass spectrometry 2017-06-07 14:15:07.670184 louis assay-name-46_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 52 acquired-data-46_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.670155 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 LC-negative mass spectrometry 2017-06-07 14:15:07.670309 louis assay-name-46_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 92 acquired-data-46_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.666716 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 LC-negative mass spectrometry 2017-06-07 14:15:07.666913 louis assay-name-30_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 78 acquired-data-30_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.666716 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 LC-negative mass spectrometry 2017-06-07 14:15:07.666767 louis assay-name-30_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 35 acquired-data-30_platform-LC_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.667109 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 LC-negative mass spectrometry 2017-06-07 14:15:07.667143 louis assay-name-32_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 45 acquired-data-32_platform-LC_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.667109 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 LC-negative mass spectrometry 2017-06-07 14:15:07.667297 louis assay-name-32_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 37 acquired-data-32_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.667647 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 LC-negative mass spectrometry 2017-06-07 14:15:07.667862 louis assay-name-34_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 5 acquired-data-34_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.667647 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 LC-negative mass spectrometry 2017-06-07 14:15:07.667689 louis assay-name-34_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF negative 53 acquired-data-34_platform-LC_run-0.mzml.gz diff --git a/isatools/create/a_mp_LC_positive_ms.txt b/isatools/create/a_mp_LC_positive_ms.txt new file mode 100644 index 00000000..afbd7403 --- /dev/null +++ b/isatools/create/a_mp_LC_positive_ms.txt @@ -0,0 +1,49 @@ +Sample Name Protocol REF Date Performer Extract Name Protocol REF Date Performer MS Assay Name Parameter Value[chromatography instrument] Parameter Value[chromatography column] Parameter Value[elution program] Parameter Value[injection mode] Parameter Value[mass spectrometry instrument] Parameter Value[scan polarity] Parameter Value[randomized run order] Raw Spectral Data File +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657750 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 LC-positive mass spectrometry 2017-06-07 14:15:07.657857 louis assay-name-24_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 22 acquired-data-24_platform-LC_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657750 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 LC-positive mass spectrometry 2017-06-07 14:15:07.657763 louis assay-name-24_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 20 acquired-data-24_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657923 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 LC-positive mass spectrometry 2017-06-07 14:15:07.657934 louis assay-name-26_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 28 acquired-data-26_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657923 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 LC-positive mass spectrometry 2017-06-07 14:15:07.657998 louis assay-name-26_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 48 acquired-data-26_platform-LC_run-1.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658061 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 LC-positive mass spectrometry 2017-06-07 14:15:07.658074 louis assay-name-28_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 72 acquired-data-28_platform-LC_run-0.mzml.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658061 rick studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 LC-positive mass spectrometry 2017-06-07 14:15:07.658151 louis assay-name-28_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 61 acquired-data-28_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655230 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 LC-positive mass spectrometry 2017-06-07 14:15:07.655268 louis assay-name-0_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 5 acquired-data-0_platform-LC_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655230 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 LC-positive mass spectrometry 2017-06-07 14:15:07.655377 louis assay-name-0_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 81 acquired-data-0_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655502 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 LC-positive mass spectrometry 2017-06-07 14:15:07.655589 louis assay-name-2_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 78 acquired-data-2_platform-LC_run-1.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655502 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 LC-positive mass spectrometry 2017-06-07 14:15:07.655522 louis assay-name-2_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 88 acquired-data-2_platform-LC_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655663 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 LC-positive mass spectrometry 2017-06-07 14:15:07.655676 louis assay-name-4_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 89 acquired-data-4_platform-LC_run-0.mzml.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655663 rick studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 LC-positive mass spectrometry 2017-06-07 14:15:07.655746 louis assay-name-4_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 91 acquired-data-4_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656308 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 LC-positive mass spectrometry 2017-06-07 14:15:07.656319 louis assay-name-12_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 32 acquired-data-12_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656308 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 LC-positive mass spectrometry 2017-06-07 14:15:07.656415 louis assay-name-12_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 4 acquired-data-12_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656479 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 LC-positive mass spectrometry 2017-06-07 14:15:07.656490 louis assay-name-14_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 30 acquired-data-14_platform-LC_run-0.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656479 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 LC-positive mass spectrometry 2017-06-07 14:15:07.656551 louis assay-name-14_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 46 acquired-data-14_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656616 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 LC-positive mass spectrometry 2017-06-07 14:15:07.657262 louis assay-name-16_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 67 acquired-data-16_platform-LC_run-1.mzml.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656616 rick studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 LC-positive mass spectrometry 2017-06-07 14:15:07.656627 louis assay-name-16_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 39 acquired-data-16_platform-LC_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658660 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 LC-positive mass spectrometry 2017-06-07 14:15:07.658748 louis assay-name-36_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 85 acquired-data-36_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658660 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 LC-positive mass spectrometry 2017-06-07 14:15:07.658678 louis assay-name-36_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 7 acquired-data-36_platform-LC_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658813 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 LC-positive mass spectrometry 2017-06-07 14:15:07.658940 louis assay-name-38_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 12 acquired-data-38_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658813 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 LC-positive mass spectrometry 2017-06-07 14:15:07.658827 louis assay-name-38_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 82 acquired-data-38_platform-LC_run-0.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659038 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 LC-positive mass spectrometry 2017-06-07 14:15:07.659110 louis assay-name-40_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 62 acquired-data-40_platform-LC_run-1.mzml.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659038 rick studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 LC-positive mass spectrometry 2017-06-07 14:15:07.659050 louis assay-name-40_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 11 acquired-data-40_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657338 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 LC-positive mass spectrometry 2017-06-07 14:15:07.657413 louis assay-name-18_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 63 acquired-data-18_platform-LC_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657338 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 LC-positive mass spectrometry 2017-06-07 14:15:07.657352 louis assay-name-18_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 50 acquired-data-18_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657479 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 LC-positive mass spectrometry 2017-06-07 14:15:07.657491 louis assay-name-20_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 16 acquired-data-20_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657479 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 LC-positive mass spectrometry 2017-06-07 14:15:07.657552 louis assay-name-20_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 93 acquired-data-20_platform-LC_run-1.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657617 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 LC-positive mass spectrometry 2017-06-07 14:15:07.657628 louis assay-name-22_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 10 acquired-data-22_platform-LC_run-0.mzml.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.657617 rick studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 LC-positive mass spectrometry 2017-06-07 14:15:07.657688 louis assay-name-22_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 27 acquired-data-22_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655818 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 LC-positive mass spectrometry 2017-06-07 14:15:07.655830 louis assay-name-6_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 3 acquired-data-6_platform-LC_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655818 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 LC-positive mass spectrometry 2017-06-07 14:15:07.655900 louis assay-name-6_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 76 acquired-data-6_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655967 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 LC-positive mass spectrometry 2017-06-07 14:15:07.656050 louis assay-name-8_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 64 acquired-data-8_platform-LC_run-1.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.655967 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 LC-positive mass spectrometry 2017-06-07 14:15:07.655979 louis assay-name-8_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 84 acquired-data-8_platform-LC_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656170 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 LC-positive mass spectrometry 2017-06-07 14:15:07.656182 louis assay-name-10_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 26 acquired-data-10_platform-LC_run-0.mzml.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.656170 rick studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 LC-positive mass spectrometry 2017-06-07 14:15:07.656245 louis assay-name-10_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 19 acquired-data-10_platform-LC_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659170 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 LC-positive mass spectrometry 2017-06-07 14:15:07.659248 louis assay-name-42_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 68 acquired-data-42_platform-LC_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659170 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 LC-positive mass spectrometry 2017-06-07 14:15:07.659184 louis assay-name-42_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 43 acquired-data-42_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659309 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 LC-positive mass spectrometry 2017-06-07 14:15:07.659322 louis assay-name-44_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 40 acquired-data-44_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659309 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 LC-positive mass spectrometry 2017-06-07 14:15:07.659385 louis assay-name-44_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 79 acquired-data-44_platform-LC_run-1.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659444 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 LC-positive mass spectrometry 2017-06-07 14:15:07.659459 louis assay-name-46_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 24 acquired-data-46_platform-LC_run-0.mzml.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.659444 rick studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 LC-positive mass spectrometry 2017-06-07 14:15:07.659551 louis assay-name-46_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 86 acquired-data-46_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658214 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 LC-positive mass spectrometry 2017-06-07 14:15:07.658291 louis assay-name-30_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 66 acquired-data-30_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658214 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 LC-positive mass spectrometry 2017-06-07 14:15:07.658228 louis assay-name-30_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 57 acquired-data-30_platform-LC_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658384 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 LC-positive mass spectrometry 2017-06-07 14:15:07.658396 louis assay-name-32_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 52 acquired-data-32_platform-LC_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658384 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 LC-positive mass spectrometry 2017-06-07 14:15:07.658458 louis assay-name-32_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 90 acquired-data-32_platform-LC_run-1.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658522 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 LC-positive mass spectrometry 2017-06-07 14:15:07.658533 louis assay-name-34_platform-LC_run-0 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 49 acquired-data-34_platform-LC_run-0.mzml.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver metabolite extraction 2017-06-07 14:15:07.658522 rick studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 LC-positive mass spectrometry 2017-06-07 14:15:07.658592 louis assay-name-34_platform-LC_run-1 Agilent Q12324A AB Hydroxyapatite Acetonitrile 90%, water 10% for 30 min, flow rate: 1ml/min LC Agilent QTOF positive 83 acquired-data-34_platform-LC_run-1.mzml.gz diff --git a/isatools/create/a_tp_ngs.txt b/isatools/create/a_tp_ngs.txt new file mode 100644 index 00000000..f5c31ece --- /dev/null +++ b/isatools/create/a_tp_ngs.txt @@ -0,0 +1,121 @@ +Sample Name Protocol REF Date Performer Extract Name Protocol REF Date Performer Labeled Extract Name Label Protocol REF Date Performer Scan Name Raw Data File +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674258 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 nucleic acid library preparation 2017-06-07 14:15:07.674271 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24labeled-extract-24 none nucleic acid sequencing 2017-06-07 14:15:07.674320 louis assay-name-24_library-0_run-1 sequence-data-24_library-0_run-1.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674258 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 nucleic acid library preparation 2017-06-07 14:15:07.674271 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24labeled-extract-24 none nucleic acid sequencing 2017-06-07 14:15:07.674306 louis assay-name-24_library-0_run-0 sequence-data-24_library-0_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674258 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 nucleic acid library preparation 2017-06-07 14:15:07.674271 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24labeled-extract-24 none nucleic acid sequencing 2017-06-07 14:15:07.674332 louis assay-name-24_library-1_run-0 sequence-data-24_library-1_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674258 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24 nucleic acid library preparation 2017-06-07 14:15:07.674271 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liverextract-24labeled-extract-24 none nucleic acid sequencing 2017-06-07 14:15:07.674346 louis assay-name-24_library-1_run-1 sequence-data-24_library-1_run-1.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678335 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liverextract-25 nucleic acid library preparation 2017-06-07 14:15:07.678343 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liverextract-25labeled-extract-25 none nucleic acid sequencing 2017-06-07 14:15:07.678358 louis assay-name-25_library-0_run-0 sequence-data-25_library-0_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674361 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 nucleic acid library preparation 2017-06-07 14:15:07.674370 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26labeled-extract-26 none nucleic acid sequencing 2017-06-07 14:15:07.674425 louis assay-name-26_library-1_run-0 sequence-data-26_library-1_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674361 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 nucleic acid library preparation 2017-06-07 14:15:07.674370 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26labeled-extract-26 none nucleic acid sequencing 2017-06-07 14:15:07.674446 louis assay-name-26_library-1_run-1 sequence-data-26_library-1_run-1.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674361 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 nucleic acid library preparation 2017-06-07 14:15:07.674370 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26labeled-extract-26 none nucleic acid sequencing 2017-06-07 14:15:07.674391 louis assay-name-26_library-0_run-0 sequence-data-26_library-0_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674361 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26 nucleic acid library preparation 2017-06-07 14:15:07.674370 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liverextract-26labeled-extract-26 none nucleic acid sequencing 2017-06-07 14:15:07.674402 louis assay-name-26_library-0_run-1 sequence-data-26_library-0_run-1.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678371 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liverextract-27 nucleic acid library preparation 2017-06-07 14:15:07.678382 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liverextract-27labeled-extract-27 none nucleic acid sequencing 2017-06-07 14:15:07.678399 louis assay-name-27_library-0_run-0 sequence-data-27_library-0_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674480 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 nucleic acid library preparation 2017-06-07 14:15:07.674502 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28labeled-extract-28 none nucleic acid sequencing 2017-06-07 14:15:07.674526 louis assay-name-28_library-0_run-0 sequence-data-28_library-0_run-0.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674480 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 nucleic acid library preparation 2017-06-07 14:15:07.674502 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28labeled-extract-28 none nucleic acid sequencing 2017-06-07 14:15:07.674537 louis assay-name-28_library-0_run-1 sequence-data-28_library-0_run-1.fastq.gz +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674480 amy studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28 nucleic acid library preparation 2017-06-07 14:15:07.674502 xua studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liverextract-28labeled-extract-28 none nucleic acid sequencing 2017-06-07 14:15:07.674589 louis assay-name-28_library-1_run-0 sequence-data-28_library-1_run-0.fastq.gz 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sequence-data-29_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.670849 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 nucleic acid library preparation 2017-06-07 14:15:07.670916 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0labeled-extract-0 none nucleic acid sequencing 2017-06-07 14:15:07.671064 louis assay-name-0_library-0_run-1 sequence-data-0_library-0_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.670849 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 nucleic acid library preparation 2017-06-07 14:15:07.670916 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0labeled-extract-0 none nucleic acid sequencing 2017-06-07 14:15:07.671116 louis assay-name-0_library-1_run-0 sequence-data-0_library-1_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.670849 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 nucleic acid library preparation 2017-06-07 14:15:07.670916 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0labeled-extract-0 none nucleic acid sequencing 2017-06-07 14:15:07.671155 louis assay-name-0_library-1_run-1 sequence-data-0_library-1_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.670849 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0 nucleic acid library preparation 2017-06-07 14:15:07.670916 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liverextract-0labeled-extract-0 none nucleic acid sequencing 2017-06-07 14:15:07.670996 louis assay-name-0_library-0_run-0 sequence-data-0_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.677696 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liverextract-1 nucleic acid library preparation 2017-06-07 14:15:07.677711 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liverextract-1labeled-extract-1 none nucleic acid sequencing 2017-06-07 14:15:07.677730 louis assay-name-1_library-0_run-0 sequence-data-1_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.671208 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 nucleic acid library preparation 2017-06-07 14:15:07.671244 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2labeled-extract-2 none nucleic acid sequencing 2017-06-07 14:15:07.671400 louis assay-name-2_library-1_run-0 sequence-data-2_library-1_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.671208 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 nucleic acid library preparation 2017-06-07 14:15:07.671244 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2labeled-extract-2 none nucleic acid sequencing 2017-06-07 14:15:07.671311 louis assay-name-2_library-0_run-0 sequence-data-2_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.671208 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 nucleic acid library preparation 2017-06-07 14:15:07.671244 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2labeled-extract-2 none nucleic acid sequencing 2017-06-07 14:15:07.671424 louis assay-name-2_library-1_run-1 sequence-data-2_library-1_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.671208 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2 nucleic acid library preparation 2017-06-07 14:15:07.671244 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liverextract-2labeled-extract-2 none nucleic acid sequencing 2017-06-07 14:15:07.671368 louis assay-name-2_library-0_run-1 sequence-data-2_library-0_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.677746 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liverextract-3 nucleic acid library preparation 2017-06-07 14:15:07.677754 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liverextract-3labeled-extract-3 none nucleic acid sequencing 2017-06-07 14:15:07.677772 louis assay-name-3_library-0_run-0 sequence-data-3_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.671464 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 nucleic acid library preparation 2017-06-07 14:15:07.671494 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4labeled-extract-4 none nucleic acid sequencing 2017-06-07 14:15:07.671597 louis assay-name-4_library-0_run-0 sequence-data-4_library-0_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.671464 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 nucleic acid library preparation 2017-06-07 14:15:07.671494 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4labeled-extract-4 none nucleic acid sequencing 2017-06-07 14:15:07.671839 louis assay-name-4_library-1_run-1 sequence-data-4_library-1_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.671464 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 nucleic acid library preparation 2017-06-07 14:15:07.671494 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4labeled-extract-4 none nucleic acid sequencing 2017-06-07 14:15:07.671816 louis assay-name-4_library-1_run-0 sequence-data-4_library-1_run-0.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.671464 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4 nucleic acid library preparation 2017-06-07 14:15:07.671494 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liverextract-4labeled-extract-4 none nucleic acid sequencing 2017-06-07 14:15:07.671764 louis assay-name-4_library-0_run-1 sequence-data-4_library-0_run-1.fastq.gz +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.677788 amy studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liverextract-5 nucleic acid library preparation 2017-06-07 14:15:07.677796 xua studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liverextract-5labeled-extract-5 none nucleic acid sequencing 2017-06-07 14:15:07.677811 louis assay-name-5_library-0_run-0 sequence-data-5_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.672800 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 nucleic acid library preparation 2017-06-07 14:15:07.672825 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12labeled-extract-12 none nucleic acid sequencing 2017-06-07 14:15:07.672916 louis assay-name-12_library-0_run-1 sequence-data-12_library-0_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.672800 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 nucleic acid library preparation 2017-06-07 14:15:07.672825 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12labeled-extract-12 none nucleic acid sequencing 2017-06-07 14:15:07.672978 louis assay-name-12_library-1_run-0 sequence-data-12_library-1_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.672800 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 nucleic acid library preparation 2017-06-07 14:15:07.672825 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12labeled-extract-12 none nucleic acid sequencing 2017-06-07 14:15:07.672865 louis assay-name-12_library-0_run-0 sequence-data-12_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.672800 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12 nucleic acid library preparation 2017-06-07 14:15:07.672825 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liverextract-12labeled-extract-12 none nucleic acid sequencing 2017-06-07 14:15:07.673057 louis assay-name-12_library-1_run-1 sequence-data-12_library-1_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678023 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liverextract-13 nucleic acid library preparation 2017-06-07 14:15:07.678032 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liverextract-13labeled-extract-13 none nucleic acid sequencing 2017-06-07 14:15:07.678047 louis assay-name-13_library-0_run-0 sequence-data-13_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673095 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 nucleic acid library preparation 2017-06-07 14:15:07.673111 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14labeled-extract-14 none nucleic acid sequencing 2017-06-07 14:15:07.673212 louis assay-name-14_library-1_run-1 sequence-data-14_library-1_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673095 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 nucleic acid library preparation 2017-06-07 14:15:07.673111 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14labeled-extract-14 none nucleic acid sequencing 2017-06-07 14:15:07.673141 louis assay-name-14_library-0_run-0 sequence-data-14_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673095 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 nucleic acid library preparation 2017-06-07 14:15:07.673111 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14labeled-extract-14 none nucleic acid sequencing 2017-06-07 14:15:07.673161 louis assay-name-14_library-0_run-1 sequence-data-14_library-0_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673095 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14 nucleic acid library preparation 2017-06-07 14:15:07.673111 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liverextract-14labeled-extract-14 none nucleic acid sequencing 2017-06-07 14:15:07.673192 louis assay-name-14_library-1_run-0 sequence-data-14_library-1_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678063 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liverextract-15 nucleic acid library preparation 2017-06-07 14:15:07.678071 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liverextract-15labeled-extract-15 none nucleic acid sequencing 2017-06-07 14:15:07.678127 louis assay-name-15_library-0_run-0 sequence-data-15_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673236 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 nucleic acid library preparation 2017-06-07 14:15:07.673249 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16labeled-extract-16 none nucleic acid sequencing 2017-06-07 14:15:07.673310 louis assay-name-16_library-1_run-0 sequence-data-16_library-1_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673236 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 nucleic acid library preparation 2017-06-07 14:15:07.673249 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16labeled-extract-16 none nucleic acid sequencing 2017-06-07 14:15:07.673270 louis assay-name-16_library-0_run-0 sequence-data-16_library-0_run-0.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673236 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 nucleic acid library preparation 2017-06-07 14:15:07.673249 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16labeled-extract-16 none nucleic acid sequencing 2017-06-07 14:15:07.673331 louis assay-name-16_library-1_run-1 sequence-data-16_library-1_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673236 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16 nucleic acid library preparation 2017-06-07 14:15:07.673249 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liverextract-16labeled-extract-16 none nucleic acid sequencing 2017-06-07 14:15:07.673281 louis assay-name-16_library-0_run-1 sequence-data-16_library-0_run-1.fastq.gz +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.678142 amy studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liverextract-17 nucleic acid library preparation 2017-06-07 14:15:07.678151 xua studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liverextract-17labeled-extract-17 none nucleic acid sequencing 2017-06-07 14:15:07.678169 louis assay-name-17_library-0_run-0 sequence-data-17_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674874 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 nucleic acid library preparation 2017-06-07 14:15:07.674885 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36labeled-extract-36 none nucleic acid sequencing 2017-06-07 14:15:07.674925 louis assay-name-36_library-1_run-0 sequence-data-36_library-1_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674874 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 nucleic acid library preparation 2017-06-07 14:15:07.674885 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36labeled-extract-36 none nucleic acid sequencing 2017-06-07 14:15:07.674901 louis assay-name-36_library-0_run-0 sequence-data-36_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674874 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 nucleic acid library preparation 2017-06-07 14:15:07.674885 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36labeled-extract-36 none nucleic acid sequencing 2017-06-07 14:15:07.674913 louis assay-name-36_library-0_run-1 sequence-data-36_library-0_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674874 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36 nucleic acid library preparation 2017-06-07 14:15:07.674885 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liverextract-36labeled-extract-36 none nucleic acid sequencing 2017-06-07 14:15:07.674935 louis assay-name-36_library-1_run-1 sequence-data-36_library-1_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678570 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liverextract-37 nucleic acid library preparation 2017-06-07 14:15:07.678578 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liverextract-37labeled-extract-37 none nucleic acid sequencing 2017-06-07 14:15:07.678595 louis assay-name-37_library-0_run-0 sequence-data-37_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674957 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 nucleic acid library preparation 2017-06-07 14:15:07.674970 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38labeled-extract-38 none nucleic acid sequencing 2017-06-07 14:15:07.674993 louis assay-name-38_library-0_run-0 sequence-data-38_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674957 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 nucleic acid library preparation 2017-06-07 14:15:07.674970 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38labeled-extract-38 none nucleic acid sequencing 2017-06-07 14:15:07.675010 louis assay-name-38_library-0_run-1 sequence-data-38_library-0_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674957 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 nucleic acid library preparation 2017-06-07 14:15:07.674970 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38labeled-extract-38 none nucleic acid sequencing 2017-06-07 14:15:07.675022 louis assay-name-38_library-1_run-0 sequence-data-38_library-1_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674957 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38 nucleic acid library preparation 2017-06-07 14:15:07.674970 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liverextract-38labeled-extract-38 none nucleic acid sequencing 2017-06-07 14:15:07.675036 louis assay-name-38_library-1_run-1 sequence-data-38_library-1_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678611 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liverextract-39 nucleic acid library preparation 2017-06-07 14:15:07.678619 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liverextract-39labeled-extract-39 none nucleic acid sequencing 2017-06-07 14:15:07.678636 louis assay-name-39_library-0_run-0 sequence-data-39_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675051 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 nucleic acid library preparation 2017-06-07 14:15:07.675059 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40labeled-extract-40 none nucleic acid sequencing 2017-06-07 14:15:07.675077 louis assay-name-40_library-0_run-0 sequence-data-40_library-0_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675051 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 nucleic acid library preparation 2017-06-07 14:15:07.675059 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40labeled-extract-40 none nucleic acid sequencing 2017-06-07 14:15:07.675117 louis assay-name-40_library-1_run-1 sequence-data-40_library-1_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675051 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 nucleic acid library preparation 2017-06-07 14:15:07.675059 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40labeled-extract-40 none nucleic acid sequencing 2017-06-07 14:15:07.675092 louis assay-name-40_library-0_run-1 sequence-data-40_library-0_run-1.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675051 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40 nucleic acid library preparation 2017-06-07 14:15:07.675059 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liverextract-40labeled-extract-40 none nucleic acid sequencing 2017-06-07 14:15:07.675104 louis assay-name-40_library-1_run-0 sequence-data-40_library-1_run-0.fastq.gz +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.678650 amy studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liverextract-41 nucleic acid library preparation 2017-06-07 14:15:07.678659 xua studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liverextract-41labeled-extract-41 none nucleic acid sequencing 2017-06-07 14:15:07.678679 louis assay-name-41_library-0_run-0 sequence-data-41_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.673360 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 nucleic acid library preparation 2017-06-07 14:15:07.673377 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18labeled-extract-18 none nucleic acid sequencing 2017-06-07 14:15:07.673436 louis assay-name-18_library-1_run-0 sequence-data-18_library-1_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.673360 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 nucleic acid library preparation 2017-06-07 14:15:07.673377 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18labeled-extract-18 none nucleic acid sequencing 2017-06-07 14:15:07.673421 louis assay-name-18_library-0_run-1 sequence-data-18_library-0_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.673360 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 nucleic acid library preparation 2017-06-07 14:15:07.673377 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18labeled-extract-18 none nucleic acid sequencing 2017-06-07 14:15:07.673404 louis assay-name-18_library-0_run-0 sequence-data-18_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.673360 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18 nucleic acid library preparation 2017-06-07 14:15:07.673377 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liverextract-18labeled-extract-18 none nucleic acid sequencing 2017-06-07 14:15:07.673447 louis assay-name-18_library-1_run-1 sequence-data-18_library-1_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678185 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liverextract-19 nucleic acid library preparation 2017-06-07 14:15:07.678196 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liverextract-19labeled-extract-19 none nucleic acid sequencing 2017-06-07 14:15:07.678231 louis assay-name-19_library-0_run-0 sequence-data-19_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673463 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 nucleic acid library preparation 2017-06-07 14:15:07.673471 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20labeled-extract-20 none nucleic acid sequencing 2017-06-07 14:15:07.673503 louis assay-name-20_library-0_run-1 sequence-data-20_library-0_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673463 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 nucleic acid library preparation 2017-06-07 14:15:07.673471 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20labeled-extract-20 none nucleic acid sequencing 2017-06-07 14:15:07.673489 louis assay-name-20_library-0_run-0 sequence-data-20_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673463 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 nucleic acid library preparation 2017-06-07 14:15:07.673471 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20labeled-extract-20 none nucleic acid sequencing 2017-06-07 14:15:07.673532 louis assay-name-20_library-1_run-1 sequence-data-20_library-1_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.673463 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20 nucleic acid library preparation 2017-06-07 14:15:07.673471 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liverextract-20labeled-extract-20 none nucleic acid sequencing 2017-06-07 14:15:07.673515 louis assay-name-20_library-1_run-0 sequence-data-20_library-1_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678246 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liverextract-21 nucleic acid library preparation 2017-06-07 14:15:07.678259 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liverextract-21labeled-extract-21 none nucleic acid sequencing 2017-06-07 14:15:07.678277 louis assay-name-21_library-0_run-0 sequence-data-21_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673548 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 nucleic acid library preparation 2017-06-07 14:15:07.673557 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22labeled-extract-22 none nucleic acid sequencing 2017-06-07 14:15:07.673575 louis assay-name-22_library-0_run-0 sequence-data-22_library-0_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673548 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 nucleic acid library preparation 2017-06-07 14:15:07.673557 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22labeled-extract-22 none nucleic acid sequencing 2017-06-07 14:15:07.673600 louis assay-name-22_library-0_run-1 sequence-data-22_library-0_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673548 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 nucleic acid library preparation 2017-06-07 14:15:07.673557 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22labeled-extract-22 none nucleic acid sequencing 2017-06-07 14:15:07.673625 louis assay-name-22_library-1_run-0 sequence-data-22_library-1_run-0.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.673548 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22 nucleic acid library preparation 2017-06-07 14:15:07.673557 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liverextract-22labeled-extract-22 none nucleic acid sequencing 2017-06-07 14:15:07.673652 louis assay-name-22_library-1_run-1 sequence-data-22_library-1_run-1.fastq.gz +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.678292 amy studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liverextract-23 nucleic acid library preparation 2017-06-07 14:15:07.678303 xua studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liverextract-23labeled-extract-23 none nucleic acid sequencing 2017-06-07 14:15:07.678319 louis assay-name-23_library-0_run-0 sequence-data-23_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.671872 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 nucleic acid library preparation 2017-06-07 14:15:07.671908 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6labeled-extract-6 none nucleic acid sequencing 2017-06-07 14:15:07.671992 louis assay-name-6_library-0_run-1 sequence-data-6_library-0_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.671872 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 nucleic acid library preparation 2017-06-07 14:15:07.671908 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6labeled-extract-6 none nucleic acid sequencing 2017-06-07 14:15:07.671957 louis assay-name-6_library-0_run-0 sequence-data-6_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.671872 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 nucleic acid library preparation 2017-06-07 14:15:07.671908 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6labeled-extract-6 none nucleic acid sequencing 2017-06-07 14:15:07.672053 louis assay-name-6_library-1_run-1 sequence-data-6_library-1_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.671872 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6 nucleic acid library preparation 2017-06-07 14:15:07.671908 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liverextract-6labeled-extract-6 none nucleic acid sequencing 2017-06-07 14:15:07.672027 louis assay-name-6_library-1_run-0 sequence-data-6_library-1_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.677833 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liverextract-7 nucleic acid library preparation 2017-06-07 14:15:07.677854 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liverextract-7labeled-extract-7 none nucleic acid sequencing 2017-06-07 14:15:07.677909 louis assay-name-7_library-0_run-0 sequence-data-7_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.672112 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 nucleic acid library preparation 2017-06-07 14:15:07.672152 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8labeled-extract-8 none nucleic acid sequencing 2017-06-07 14:15:07.672214 louis assay-name-8_library-0_run-0 sequence-data-8_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.672112 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 nucleic acid library preparation 2017-06-07 14:15:07.672152 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8labeled-extract-8 none nucleic acid sequencing 2017-06-07 14:15:07.672363 louis assay-name-8_library-1_run-1 sequence-data-8_library-1_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.672112 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 nucleic acid library preparation 2017-06-07 14:15:07.672152 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8labeled-extract-8 none nucleic acid sequencing 2017-06-07 14:15:07.672317 louis assay-name-8_library-1_run-0 sequence-data-8_library-1_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.672112 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8 nucleic acid library preparation 2017-06-07 14:15:07.672152 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liverextract-8labeled-extract-8 none nucleic acid sequencing 2017-06-07 14:15:07.672273 louis assay-name-8_library-0_run-1 sequence-data-8_library-0_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.677934 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liverextract-9 nucleic acid library preparation 2017-06-07 14:15:07.677946 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liverextract-9labeled-extract-9 none nucleic acid sequencing 2017-06-07 14:15:07.677963 louis assay-name-9_library-0_run-0 sequence-data-9_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.672427 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 nucleic acid library preparation 2017-06-07 14:15:07.672464 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10labeled-extract-10 none nucleic acid sequencing 2017-06-07 14:15:07.672509 louis assay-name-10_library-0_run-0 sequence-data-10_library-0_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.672427 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 nucleic acid library preparation 2017-06-07 14:15:07.672464 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10labeled-extract-10 none nucleic acid sequencing 2017-06-07 14:15:07.672614 louis assay-name-10_library-1_run-0 sequence-data-10_library-1_run-0.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.672427 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 nucleic acid library preparation 2017-06-07 14:15:07.672464 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10labeled-extract-10 none nucleic acid sequencing 2017-06-07 14:15:07.672755 louis assay-name-10_library-1_run-1 sequence-data-10_library-1_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.672427 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10 nucleic acid library preparation 2017-06-07 14:15:07.672464 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liverextract-10labeled-extract-10 none nucleic acid sequencing 2017-06-07 14:15:07.672567 louis assay-name-10_library-0_run-1 sequence-data-10_library-0_run-1.fastq.gz +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.677978 amy studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liverextract-11 nucleic acid library preparation 2017-06-07 14:15:07.677989 xua studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liverextract-11labeled-extract-11 none nucleic acid sequencing 2017-06-07 14:15:07.678007 louis assay-name-11_library-0_run-0 sequence-data-11_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.675132 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 nucleic acid library preparation 2017-06-07 14:15:07.675140 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42labeled-extract-42 none nucleic acid sequencing 2017-06-07 14:15:07.675224 louis assay-name-42_library-1_run-0 sequence-data-42_library-1_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.675132 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 nucleic acid library preparation 2017-06-07 14:15:07.675140 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42labeled-extract-42 none nucleic acid sequencing 2017-06-07 14:15:07.675260 louis assay-name-42_library-1_run-1 sequence-data-42_library-1_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.675132 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 nucleic acid library preparation 2017-06-07 14:15:07.675140 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42labeled-extract-42 none nucleic acid sequencing 2017-06-07 14:15:07.675190 louis assay-name-42_library-0_run-0 sequence-data-42_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.675132 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42 nucleic acid library preparation 2017-06-07 14:15:07.675140 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liverextract-42labeled-extract-42 none nucleic acid sequencing 2017-06-07 14:15:07.675203 louis assay-name-42_library-0_run-1 sequence-data-42_library-0_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678695 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liverextract-43 nucleic acid library preparation 2017-06-07 14:15:07.678704 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liverextract-43labeled-extract-43 none nucleic acid sequencing 2017-06-07 14:15:07.678730 louis assay-name-43_library-0_run-0 sequence-data-43_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.675288 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 nucleic acid library preparation 2017-06-07 14:15:07.675300 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44labeled-extract-44 none nucleic acid sequencing 2017-06-07 14:15:07.675328 louis assay-name-44_library-0_run-0 sequence-data-44_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.675288 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 nucleic acid library preparation 2017-06-07 14:15:07.675300 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44labeled-extract-44 none nucleic acid sequencing 2017-06-07 14:15:07.675379 louis assay-name-44_library-1_run-1 sequence-data-44_library-1_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.675288 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 nucleic acid library preparation 2017-06-07 14:15:07.675300 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44labeled-extract-44 none nucleic acid sequencing 2017-06-07 14:15:07.675363 louis assay-name-44_library-1_run-0 sequence-data-44_library-1_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.675288 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44 nucleic acid library preparation 2017-06-07 14:15:07.675300 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liverextract-44labeled-extract-44 none nucleic acid sequencing 2017-06-07 14:15:07.675349 louis assay-name-44_library-0_run-1 sequence-data-44_library-0_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678761 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liverextract-45 nucleic acid library preparation 2017-06-07 14:15:07.678776 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liverextract-45labeled-extract-45 none nucleic acid sequencing 2017-06-07 14:15:07.678808 louis assay-name-45_library-0_run-0 sequence-data-45_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675394 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 nucleic acid library preparation 2017-06-07 14:15:07.675402 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46labeled-extract-46 none nucleic acid sequencing 2017-06-07 14:15:07.675445 louis assay-name-46_library-1_run-0 sequence-data-46_library-1_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675394 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 nucleic acid library preparation 2017-06-07 14:15:07.675402 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46labeled-extract-46 none nucleic acid sequencing 2017-06-07 14:15:07.675456 louis assay-name-46_library-1_run-1 sequence-data-46_library-1_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675394 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 nucleic acid library preparation 2017-06-07 14:15:07.675402 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46labeled-extract-46 none nucleic acid sequencing 2017-06-07 14:15:07.675420 louis assay-name-46_library-0_run-0 sequence-data-46_library-0_run-0.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.675394 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46 nucleic acid library preparation 2017-06-07 14:15:07.675402 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liverextract-46labeled-extract-46 none nucleic acid sequencing 2017-06-07 14:15:07.675433 louis assay-name-46_library-0_run-1 sequence-data-46_library-0_run-1.fastq.gz +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.678836 amy studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liverextract-47 nucleic acid library preparation 2017-06-07 14:15:07.678852 xua studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liverextract-47labeled-extract-47 none nucleic acid sequencing 2017-06-07 14:15:07.678885 louis assay-name-47_library-0_run-0 sequence-data-47_library-0_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674633 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 nucleic acid library preparation 2017-06-07 14:15:07.674645 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30labeled-extract-30 none nucleic acid sequencing 2017-06-07 14:15:07.674687 louis assay-name-30_library-1_run-0 sequence-data-30_library-1_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674633 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 nucleic acid library preparation 2017-06-07 14:15:07.674645 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30labeled-extract-30 none nucleic acid sequencing 2017-06-07 14:15:07.674698 louis assay-name-30_library-1_run-1 sequence-data-30_library-1_run-1.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674633 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 nucleic acid library preparation 2017-06-07 14:15:07.674645 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30labeled-extract-30 none nucleic acid sequencing 2017-06-07 14:15:07.674662 louis assay-name-30_library-0_run-0 sequence-data-30_library-0_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver RNA extraction 2017-06-07 14:15:07.674633 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30 nucleic acid library preparation 2017-06-07 14:15:07.674645 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liverextract-30labeled-extract-30 none nucleic acid sequencing 2017-06-07 14:15:07.674675 louis assay-name-30_library-0_run-1 sequence-data-30_library-0_run-1.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#1_liver RNA extraction 2017-06-07 14:15:07.678453 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#1_liverextract-31 nucleic acid library preparation 2017-06-07 14:15:07.678464 xua 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xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32labeled-extract-32 none nucleic acid sequencing 2017-06-07 14:15:07.674743 louis assay-name-32_library-0_run-0 sequence-data-32_library-0_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674717 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 nucleic acid library preparation 2017-06-07 14:15:07.674726 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32labeled-extract-32 none nucleic acid sequencing 2017-06-07 14:15:07.674776 louis assay-name-32_library-1_run-1 sequence-data-32_library-1_run-1.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver RNA extraction 2017-06-07 14:15:07.674717 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32 nucleic acid library preparation 2017-06-07 14:15:07.674726 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liverextract-32labeled-extract-32 none nucleic acid sequencing 2017-06-07 14:15:07.674765 louis assay-name-32_library-1_run-0 sequence-data-32_library-1_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liver RNA extraction 2017-06-07 14:15:07.678492 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liverextract-33 nucleic acid library preparation 2017-06-07 14:15:07.678500 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liverextract-33labeled-extract-33 none nucleic acid sequencing 2017-06-07 14:15:07.678515 louis assay-name-33_library-0_run-0 sequence-data-33_library-0_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674791 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 nucleic acid library preparation 2017-06-07 14:15:07.674803 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34labeled-extract-34 none nucleic acid sequencing 2017-06-07 14:15:07.674833 louis assay-name-34_library-0_run-1 sequence-data-34_library-0_run-1.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674791 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 nucleic acid library preparation 2017-06-07 14:15:07.674803 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34labeled-extract-34 none nucleic acid sequencing 2017-06-07 14:15:07.674821 louis assay-name-34_library-0_run-0 sequence-data-34_library-0_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674791 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 nucleic acid library preparation 2017-06-07 14:15:07.674803 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34labeled-extract-34 none nucleic acid sequencing 2017-06-07 14:15:07.674855 louis assay-name-34_library-1_run-1 sequence-data-34_library-1_run-1.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver RNA extraction 2017-06-07 14:15:07.674791 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34 nucleic acid library preparation 2017-06-07 14:15:07.674803 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liverextract-34labeled-extract-34 none nucleic acid sequencing 2017-06-07 14:15:07.674844 louis assay-name-34_library-1_run-0 sequence-data-34_library-1_run-0.fastq.gz +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liver RNA extraction 2017-06-07 14:15:07.678533 amy studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liverextract-35 nucleic acid library preparation 2017-06-07 14:15:07.678541 xua studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liverextract-35labeled-extract-35 none nucleic acid sequencing 2017-06-07 14:15:07.678556 louis assay-name-35_library-0_run-0 sequence-data-35_library-0_run-0.fastq.gz diff --git a/isatools/create/i_investigation.txt b/isatools/create/i_investigation.txt new file mode 100644 index 00000000..d464eae6 --- /dev/null +++ b/isatools/create/i_investigation.txt @@ -0,0 +1,93 @@ +ONTOLOGY SOURCE REFERENCE +Term Source Name OBI STATO STATO +Term Source File +Term Source Version +Term Source Description Ontology for Biomedical Investigations Ontology for Statistical Methods Ontology for Statistical Methods +INVESTIGATION +Investigation Identifier +Investigation Title +Investigation Description +Investigation Submission Date +Investigation Public Release Date +INVESTIGATION PUBLICATIONS +Investigation PubMed ID +Investigation Publication DOI +Investigation Publication Author List +Investigation Publication Title +Investigation Publication Status +Investigation Publication Status Term Accession Number +Investigation Publication Status Term Source REF +INVESTIGATION CONTACTS +Investigation Person Last Name +Investigation Person First Name +Investigation Person Mid Initials +Investigation Person Email +Investigation Person Phone +Investigation Person Fax +Investigation Person Address +Investigation Person Affiliation +Investigation Person Roles +Investigation Person Roles Term Accession Number +Investigation Person Roles Term Source REF +STUDY +Study Identifier b5e5a99f-1911-4e6e-909a-653d10aa072b +Study Title boilerplate title +Study Description boilerplate study description (testing purpose) +Study Submission Date 2017-06-07 +Study Public Release Date 2017-07-07 +Study File Name s_study.txt +Comment[number of study groups] 8.0 +Comment[study group size] 3.0 +STUDY DESIGN DESCRIPTORS +Study Design Type intervention design full factorial design balanced design +Study Design Type Term Accession Number http://purl.obolibrary.org/obo/OBI_0000115 http://purl.obolibrary.org/obo/STATO_0000270 http://purl.obolibrary.org/obo/STATO_0000003 +Study Design Type Term Source REF OBI STATO STATO +STUDY PUBLICATIONS +Study PubMed ID 12345678 +Study Publication DOI +Study Publication Author List A. Robertson, B. Robertson +Study Publication Title boiler plate publication +Study Publication Status published +Study Publication Status Term Accession Number +Study Publication Status Term Source REF +STUDY FACTORS +Study Factor Name agent dose duration of exposure +Study Factor Type perturbation agent intensity time +Study Factor Type Term Accession Number +Study Factor Type Term Source REF +STUDY ASSAYS +Study Assay File Name a_mp_FIA_positive_ms.txt a_mp_FIA_negative_ms.txt a_mp_LC_positive_ms.txt a_mp_LC_negative_ms.txt a_tp_ngs.txt +Study Assay Measurement Type metabolite profiling metabolite profiling metabolite profiling metabolite profiling transcription profiling +Study Assay Measurement Type Term Accession Number +Study Assay Measurement Type Term Source REF +Study Assay Technology Type FIA-positive mass spectrometry FIA-negative mass spectrometry LC-positive mass spectrometry LC-negative mass spectrometry nucleic acid sequencing +Study Assay Technology Type Term Accession Number +Study Assay Technology Type Term Source REF +Study Assay Technology Platform +STUDY PROTOCOLS +Study Protocol Name sample collection metabolite extraction FIA-positive mass spectrometry metabolite extraction FIA-negative mass spectrometry metabolite extraction LC-positive mass spectrometry metabolite extraction LC-negative mass spectrometry RNA extraction nucleic acid library preparation nucleic acid sequencing +Study Protocol Type sample collection material separation mass spectrometry material separation mass spectrometry material separation mass spectrometry material separation mass spectrometry material separation material labeling data collection +Study Protocol Type Term Accession Number +Study Protocol Type Term Source REF +Study Protocol Description +Study Protocol URI +Study Protocol Version +Study Protocol Parameters Name randomized run order;injection mode;mass spectrometry instrument;scan polarity randomized run order;injection mode;mass spectrometry instrument;scan polarity randomized run order;injection mode;mass spectrometry instrument;scan polarity randomized run order;injection mode;mass spectrometry instrument;scan polarity +Study Protocol Parameters Name Term Accession Number ;;; ;;; ;;; ;;; +Study Protocol Parameters Name Term Source REF ;;; ;;; ;;; ;;; +Study Protocol Components Name +Study Protocol Components Type +Study Protocol Components Type Term Accession Number +Study Protocol Components Type Term Source REF +STUDY CONTACTS +Study Person Last Name Plate +Study Person First Name Boiler +Study Person Mid Initials +Study Person Email +Study Person Phone +Study Person Fax +Study Person Address +Study Person Affiliation boiler plate affiliation +Study Person Roles +Study Person Roles Term Accession Number +Study Person Roles Term Source REF diff --git a/isatools/create/s_study.txt b/isatools/create/s_study.txt new file mode 100644 index 00000000..60b67138 --- /dev/null +++ b/isatools/create/s_study.txt @@ -0,0 +1,49 @@ +Source Name Characteristics[organism] Term Source REF Term Accession Number Protocol REF Date Performer Sample Name Characteristics[organism part] Characteristics[collection event rank] Factor Value[agent] Factor Value[duration of exposure] Factor Value[dose] +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#1_liver liver 2 a 2 h +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#0_sample#0_liver liver 1 a 2 h +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#0_liver liver 1 a 2 h +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#1_sample#1_liver liver 2 a 2 h +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#1_liver liver 2 a 2 h +studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_179f5d8e-d4f7-45d5-9f7e-1d61115fbf74_subject#2_sample#0_liver liver 1 a 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#1_liver liver 2 b 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#0_sample#0_liver liver 1 b 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#0_liver liver 1 b 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#1_sample#1_liver liver 2 b 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#1_liver liver 2 b 2 h +studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_84023308-e9c1-4c6c-a59d-a41f6d98a9f8_subject#2_sample#0_liver liver 1 b 2 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#0_liver liver 1 b 1 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#0_sample#1_liver liver 2 b 1 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#1_liver liver 2 b 1 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#1_sample#0_liver liver 1 b 1 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#1_liver liver 2 b 1 h +studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_863ad0b9-42ab-41b5-aa19-cd859fc8da4f_subject#2_sample#0_liver liver 1 b 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#1_liver liver 2 a 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#0_sample#0_liver liver 1 a 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#1_liver liver 2 a 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#1_sample#0_liver liver 1 a 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#0_liver liver 1 a 1 h +studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_8a33779e-19a9-4839-bc86-97fbe0c6f646_subject#2_sample#1_liver liver 2 a 1 h +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#0_liver liver 1 b 1 l +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#0_sample#1_liver liver 2 b 1 l +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#0_liver liver 1 b 1 l +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#1_sample#1_liver liver 2 b 1 l +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#1_liver liver 2 b 1 l +studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_9e9e4a4c-9c5b-4550-8284-c65bbbb27b6a_subject#2_sample#0_liver liver 1 b 1 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#0_liver liver 1 b 2 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#0_sample#1_liver liver 2 b 2 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#1_liver liver 2 b 2 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#1_sample#0_liver liver 1 b 2 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#1_liver liver 2 b 2 l +studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_b74c861d-bd97-40b5-8f97-068e53c7e5d3_subject#2_sample#0_liver liver 1 b 2 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#1_liver liver 2 a 1 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#0_sample#0_liver liver 1 a 1 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#1_liver liver 2 a 1 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#1_sample#0_liver liver 1 a 1 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#1_liver liver 2 a 1 l +studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_cfd67551-861f-4a03-89ff-3468f860a188_subject#2_sample#0_liver liver 1 a 1 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#1_liver liver 2 a 2 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#0_sample#0_liver liver 1 a 2 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#1_liver liver 2 a 2 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#1_sample#0_liver liver 1 a 2 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#1_liver liver 2 a 2 l +studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2 Homo sapiens NCBITaxon http://purl.bioontology.org/ontology/NCBITAXON/9606 sample collection 2017-05-08 bob studygroup_ead3df8d-ab1d-43f0-bd5c-cb7bef144a21_subject#2_sample#0_liver liver 1 a 2 l diff --git a/isatools/create/study_design.py b/isatools/create/study_design.py index efb895fe..e6d4eab5 100644 --- a/isatools/create/study_design.py +++ b/isatools/create/study_design.py @@ -536,7 +536,8 @@ def set_study_arms(list_of_study_group_dictionaries, this_investigation, this_re if size > 0: study_group_size = size - + stato = OntologySource(name="STATO", description="Ontology for Statistical Methods") + this_investigation.ontology_source_references.append(stato) design_term = OntologyAnnotation(term_source=stato) design_term.term = "balanced design" design_term.term_accession = "http://purl.obolibrary.org/obo/STATO_0000003" @@ -575,7 +576,8 @@ def set_study_arms(list_of_study_group_dictionaries, this_investigation, this_re size = int(size) if int(size) > 0: study_group_size = size - + stato = OntologySource(name="STATO", description="Ontology for Statistical Methods") + this_investigation.ontology_source_references.append(stato) design_term = OntologyAnnotation(term_source=stato) design_term.term = "unbalanced design" design_term.term_accession = "http://purl.obolibrary.org/obo/STATO_000000X" From 77d345e2c9f83af30ad26609b5ea5c5cb9d4cb94 Mon Sep 17 00:00:00 2001 From: Philippe Rocca-Serra Date: Wed, 7 Jun 2017 17:43:10 +0100 Subject: [PATCH 3/4] testing trees --- isatools/create/isa-possible-workflows.json | 87 +++++++++++++++++++++ 1 file changed, 87 insertions(+) create mode 100644 isatools/create/isa-possible-workflows.json diff --git a/isatools/create/isa-possible-workflows.json b/isatools/create/isa-possible-workflows.json new file mode 100644 index 00000000..8209d901 --- /dev/null +++ b/isatools/create/isa-possible-workflows.json @@ -0,0 +1,87 @@ +{ + "assay_type": { + "name": "mass spectrometry", + "abbreviation": "MS", + "uri" : "", + "sample_injection_type": { + "name": "direct infusion assay", + "abbreviation" : "DIA", + "polarity_mode": ["positive_mode","negative mode"], + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "liquid chromatography assay", + "abbreviation" : "LC", + "polarity_mode": ["positive_mode","negative mode"], + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "gas chromatography assay", + "abbreviation" : "GC", + "polarity_mode": ["positive_mode","negative mode"], + "number_of_injection": "" + } + }, + "name": "nmr spectroscopy", + "abbreviation": "NMR", + "uri" : "", + "sample_injection_type": { + "name": "liquid chromatography assay", + "abbreviation" : "LC", + "acquisition": { + "dimension": { + "name": "1 dimension NMR", + "abbreviation" : "1D", + "nucleus": ["1H","13C"], + "pulse_sequence" : ["CPMG","NOESY","J-RES"] + } + }, + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "liquid chromatography assay", + "abbreviation" : "LC", + "acquisition": { + "dimension": { + "name": "2 dimension NMR", + "abbreviation" : "2D", + "nucleus": ["1H-1H","1H-13C","13C-13C"], + "pulse_sequence" : ["HSQC","TOCSY","TOESY","other"] + } + }, + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "gas chromatography assay", + "abbreviation": "GC", + "acquisition": { + "dimension": { + "name": "1 dimension NMR", + "abbreviation": "1D", + "nucleus": [ + "1H", + "13C" + ], + "pulse_sequence": [ + "CPMG", + "NOESY", + "J-RES" + ] + } + }, + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "gas chromatography assay", + "abbreviation" : "GC", + "acquisition": { + "dimension": { + "name": "2 dimension NMR", + "abbreviation" : "2D", + "nucleus": ["1H-1H","1H-13C","13C-13C"], + "pulse_sequence" : ["HSQC","TOCSY","TOESY","other"] + } + }, + "number_of_injection": "" + } +} From e070b045506f1d2775c6a4bf5d9478332f2aade9 Mon Sep 17 00:00:00 2001 From: Philippe Rocca-Serra Date: Thu, 8 Jun 2017 12:19:26 +0100 Subject: [PATCH 4/4] update to json file --- isatools/create/isa-possible-workflows.json | 203 +++++++++++++------- 1 file changed, 131 insertions(+), 72 deletions(-) diff --git a/isatools/create/isa-possible-workflows.json b/isatools/create/isa-possible-workflows.json index 8209d901..862c2939 100644 --- a/isatools/create/isa-possible-workflows.json +++ b/isatools/create/isa-possible-workflows.json @@ -2,86 +2,145 @@ "assay_type": { "name": "mass spectrometry", "abbreviation": "MS", - "uri" : "", - "sample_injection_type": { - "name": "direct infusion assay", - "abbreviation" : "DIA", - "polarity_mode": ["positive_mode","negative mode"], - "number_of_injection": "" - }, + "uri": "", "sample_injection_type": { - "name": "liquid chromatography assay", - "abbreviation" : "LC", - "polarity_mode": ["positive_mode","negative mode"], - "number_of_injection": "" - }, - "sample_injection_type": { - "name": "gas chromatography assay", - "abbreviation" : "GC", - "polarity_mode": ["positive_mode","negative mode"], - "number_of_injection": "" - } + "name": "direct infusion assay", + "abbreviation": "DIA", + "polarity_mode": [ + "positive_mode", + "negative mode" + ], + "number_of_injection": "" }, - "name": "nmr spectroscopy", - "abbreviation": "NMR", - "uri" : "", "sample_injection_type": { - "name": "liquid chromatography assay", - "abbreviation" : "LC", - "acquisition": { - "dimension": { - "name": "1 dimension NMR", - "abbreviation" : "1D", - "nucleus": ["1H","13C"], - "pulse_sequence" : ["CPMG","NOESY","J-RES"] - } - }, + "name": "liquid chromatography assay", + "abbreviation": "LC", + "polarity_mode": [ + "positive_mode", + "negative mode" + ], "number_of_injection": "" - }, - "sample_injection_type": { - "name": "liquid chromatography assay", - "abbreviation" : "LC", - "acquisition": { - "dimension": { - "name": "2 dimension NMR", - "abbreviation" : "2D", - "nucleus": ["1H-1H","1H-13C","13C-13C"], - "pulse_sequence" : ["HSQC","TOCSY","TOESY","other"] - } - }, - "number_of_injection": "" - }, + }, "sample_injection_type": { "name": "gas chromatography assay", "abbreviation": "GC", - "acquisition": { - "dimension": { - "name": "1 dimension NMR", - "abbreviation": "1D", - "nucleus": [ - "1H", - "13C" - ], - "pulse_sequence": [ - "CPMG", - "NOESY", - "J-RES" - ] - } - }, + "polarity_mode": [ + "positive_mode", + "negative mode" + ], "number_of_injection": "" + } + }, + "assay_type": { + "name": "nmr spectroscopy", + "abbreviation": "NMR", + "uri": "", + "sample_injection_type": { + "name": "liquid chromatography assay", + "abbreviation": "LC", + "acquisition": { + "dimension": { + "name": "1 dimension NMR", + "abbreviation": "1D", + "nuclei": [ + "1H", + "13C" + ], + "pulse_sequence": [ + "CPMG", + "NOESY", + "J-RES" + ] + } }, - "sample_injection_type": { - "name": "gas chromatography assay", - "abbreviation" : "GC", - "acquisition": { - "dimension": { - "name": "2 dimension NMR", - "abbreviation" : "2D", - "nucleus": ["1H-1H","1H-13C","13C-13C"], - "pulse_sequence" : ["HSQC","TOCSY","TOESY","other"] - } - }, - "number_of_injection": "" + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "liquid chromatography assay", + "abbreviation": "LC", + "acquisition": { + "dimension": { + "name": "2 dimension NMR", + "abbreviation": "2D", + "nuclei": [ + "1H-1H", + "1H-13C", + "13C-13C" + ], + "pulse_sequence": [ + "HSQC", + "TOCSY", + "TOESY", + "other" + ] + } + }, + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "gas chromatography assay", + "abbreviation": "GC", + "acquisition": { + "dimension": { + "name": "1 dimension NMR", + "abbreviation": "1D", + "nuclei": [ + "1H", + "13C" + ], + "pulse_sequence": [ + "CPMG", + "NOESY", + "J-RES" + ] } + }, + "number_of_injection": "" + }, + "sample_injection_type": { + "name": "gas chromatography assay", + "abbreviation": "GC", + "acquisition": { + "dimension": { + "name": "2 dimension NMR", + "abbreviation": "2D", + "nuclei": [ + "1H-1H", + "1H-13C", + "13C-13C" + ], + "pulse_sequence": [ + "HSQC", + "TOCSY", + "TOESY", + "other" + ] + } + }, + "number_of_injection": "" + } +}, + "assay_type": { + "name" : "dna microarray", + "abbreviation" : "genechip", + "uri" : "", + "array_designs" : { + "name" : "", + "uri" : "" + }, + "acquisition" : { + "channels" : ["1","2","3"] + }, + "number_of_techrep": "" + }, + "assay_type" : { + "name" : "dna sequencing", + "abbreviation" : "NGS", + "uri" : "", + "number_of_libraries":"", + "acquisition" :{ + "multiplex_identifier":["",""] + }, + "number_of_techrep": "" + } }