Tested version of metagenemark component

Author: jorvis

docker/chiron-metagenemark/Dockerfile

@@ -7,17 +7,18 @@ FROM ubuntu:18.04
 MAINTAINER Joshua Orvis <[email protected]>
 LABEL Description="This image is used to run the metagenomic gene prediction tool MetaGeneMark, and includes biocode for format conversion" Version="1.0.0"
 
-RUN apt-get -y update && apt-get install -y wget python3 python3-pip
+RUN apt-get -y update && apt-get install -y wget python3 python3-pip libxml2-dev zlib1g-dev
 
-RUN wget -O metagenemark.tar.gz https://www.dropbox.com/s/2ruuby8pgy631pk/MetaGeneMark_linux_64.tar.gz?dl=0
+# For reference databases needed by tools
+RUN mkdir /dbs
+
+RUN wget -O metagenemark.tar.gz https://www.dropbox.com/s/pbj2cix0jc9kl9s/MetaGeneMark_linux_64.tar.gz?dl=0
 RUN tar -xzf metagenemark.tar.gz
 RUN mv MetaGeneMark_linux_64/mgm/gmhmmp /usr/bin/
-RUN mv MetaGeneMark_linux_64/mgm/MetaGeneMark_v1.mod .
+RUN mv MetaGeneMark_linux_64/mgm/MetaGeneMark_v1.mod /dbs/
+RUN cp MetaGeneMark_linux_64/gm_key_64 /root/.gm_key
 
 RUN pip3 install biocode
 
-# For reference databases needed by tools
-RUN mkdir /dbs
-
 # For demonstration datasets
 RUN mkdir /tutorials