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Sample Sheet CSV file for EPIC Array #1

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YuanTian1991 opened this issue Feb 21, 2020 · 3 comments
Open

Sample Sheet CSV file for EPIC Array #1

YuanTian1991 opened this issue Feb 21, 2020 · 3 comments

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@YuanTian1991
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Hello N. Alcala:

I want to use your EPIC Array data published with this paper. We have got access from EGA for EGAD00010001720. However, I can not find corresponding sample sheet file anywhere. I think normally, EPIC array would be company with a csv file, indicating each IDAT file with sample right?

Could you tell me where I can find this phenotype file information?

Best
Tian

@nalcala
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nalcala commented Feb 21, 2020

Hi Tian,

Indeed, we need to put this file out there! Sorry about that, I will try to get it ASAP.

I will get back to you soon

Nicolas

@YuanTian1991
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Thank you very much. I have been searching across the paper and supplementary for a long time.

If it's not too hard to find the csv file, I hope you can update soon or email me, cause we are kind of hurry on our research. However, if you need more time, it's definitely OK as well.

Thanks again for maintaining the code and everything related to the paper, and reply so quickly. ^_^

Best
Tian

@nalcala
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nalcala commented Mar 2, 2020

You should now have received what you need. I am keeping this issue open until I see with EGA why the metadata is not there for everyone.

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