expression_matrix_semantic_map.json

{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "description": "",
  "additionalProperties": false,
  "required": [
    "semantic_map"
  ],
  "title": "Expression matrix semantic map",
  "name": "expression_matrix_semantic_map",
  "type": "object",
  "definitions": {
    "ontology_term": {
      "description": "An ontology term - referred to by label and identifier (curie).",
      "additionalProperties": false,
      "required": [
        "name",
        "id"
      ],
      "properties": {
        "name": {
          "description": "The name (label) of an ontology term. This may refer to a class or relation.",
          "type": "string"
        },
        "id": {
          "description": "The id (curie) of an ontology term. This must follow standard curie format (base:short_form) and may refer to a class or relation.",
          "type": "string"
        }
      }
    },
    "map_element": {
      "additionalProperties": false,
      "required": [
        "name",
        "maps_to",
        "applicable_to"
      ],
      "properties": {
        "name": {
          "description": "A string used in annotation",
          "type": "string"
        },
        "maps_to": {
          "description": "One or more ontology classes to which this  ",
          "type": "array",
          "items": {
            "$ref": "#/definitions/ontology_term"
          },
          "minItems": 1,
          "uniqueItems": true
        },
        "applicable_to": {
          "description": "A list of column names for which this value is a valid entry. Each entry must be a column header the for which this JSON provides an annotation map.",
          "type": "array",
          "items": { "type": "string"},
          "minItems": 1,
          "uniqueItems": true
        },
        "subject_of": {
          "type": "object",
          "properties": {
            "relation": {
              "$ref": "#/definitions/ontology_term"
            },
            "object": {
              "description": "",
              "type": "string"
            }
          }
        },
        "ancestor_name_lookup" : {
          "description": "A list of names and synonyms of ancestor classes of the mapped terms. **The contents of this field should be auto-generated. DO NOT POPULATE MANUALLY!**",
          "type": "array",
          "items": {
            "type": "string"
          }
        },
        "comment": {
          "description": "A free text comment on the annotation value and its use. ",
          "type": "string"
        }
      }
    }
  },
  "properties": {
    "semantic_map": {
      "type": "array",
      "items": {
        "$ref": "#/definitions/map_element"
      }
    }
  }
}