environment.yml

name: methylpy
channels:
  - anaconda
  - bioconda
  - defaults
dependencies:
  - ca-certificates=2019.5.15=0
  - bowtie=1.0.0=1
  - bowtie2=2.3.4.3=py37he860b03_1
  - cutadapt=2.4=py37h14c3975_0
  - dnaio=0.3=py37h14c3975_1
  - fastqc=0.11.8=1
  - libdeflate=1.0=h14c3975_1
  - mysql-connector-c=6.1.6=2
  - picard=2.20.4=0
  - samtools=1.9=h91753b0_8
  - sra-tools=2.9.6=hf484d3e_0
  - trim-galore=0.6.3=0
  - ucsc-bedgraphtobigwig=357=1
  - ucsc-wigtobigwig=357=1
  - xopen=0.7.3=py_0
  - _libgcc_mutex=0.1=main
  - blas=1.0=mkl
  - bz2file=0.98=py37_1
  - bzip2=1.0.8=h7b6447c_0
  - certifi=2019.6.16=py37_0
  - curl=7.61.0=h84994c4_0
  - font-ttf-dejavu-sans-mono=2.37=h6964260_0
  - fontconfig=2.13.0=h9420a91_0
  - freetype=2.9.1=h8a8886c_1
  - h5py=2.9.0=py37h7918eee_0
  - hdf5=1.10.4=hb1b8bf9_0
  - icu=58.2=h9c2bf20_1
  - intel-openmp=2019.4=243
  - krb5=1.16.1=hc83ff2d_6
  - libcurl=7.61.0=h1ad7b7a_0
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=9.1.0=hdf63c60_0
  - libgfortran-ng=7.3.0=hdf63c60_0
  - libpng=1.6.37=hbc83047_0
  - libssh2=1.8.0=h9cfc8f7_4
  - libstdcxx-ng=9.1.0=hdf63c60_0
  - libuuid=1.0.3=h1bed415_2
  - libxml2=2.9.9=hea5a465_1
  - mkl=2019.4=243
  - mkl_fft=1.0.12=py37ha843d7b_0
  - mkl_random=1.0.2=py37hd81dba3_0
  - ncurses=6.1=he6710b0_1
  - numpy=1.16.4=py37h7e9f1db_0
  - numpy-base=1.16.4=py37hde5b4d6_0
  - openjdk=8.0.152=h46b5887_1
  - openssl=1.0.2s=h7b6447c_0
  - perl=5.26.2=h14c3975_0
  - pigz=2.4=h84994c4_0
  - pip=19.1.1=py37_0
  - python=3.7.0=h6e4f718_3
  - readline=7.0=h7b6447c_5
  - setuptools=41.0.1=py37_0
  - six=1.12.0=py37_0
  - sqlite=3.29.0=h7b6447c_0
  - tbb=2019.4=hfd86e86_0
  - tk=8.6.8=hbc83047_0
  - wheel=0.33.4=py37_0
  - xz=5.2.4=h14c3975_4
  - zlib=1.2.11=h7b6447c_3
  - pip:
    - methylpy==1.3.7
    - scipy==1.3.0