From 800793040ea56b5888b5495328d9db40184e008d Mon Sep 17 00:00:00 2001 From: rahbz Date: Wed, 14 Dec 2016 11:27:36 +0100 Subject: [PATCH] changed README! --- README.md | 7 +++---- setup.py | 8 ++++---- 2 files changed, 7 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index a5f0948..3dab261 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ pip install SNPmatch ### Requirements -The snpmatch uses various python packages (numpy, pandas, pygwas, vcfnp). The main SNP database should be a HDF5 file with specific keys. Mainly read using pygwas package. +The SNPmatch uses various python packages (numpy, pandas, pygwas, vcfnp). The main SNP database should be a HDF5 file with specific keys. Mainly read using pygwas package. ### Input files @@ -47,6 +47,8 @@ SNPmatch can be run as bash commands given below. A detailed manual for each com ```bash snpmatch inbred -i input_file -d db.hdf5 -e db.acc.hdf5 -o output_file snpmatch cross -i input_file -d db.hdf5 -e db.acc.hdf5 -o output_file -s score_file +# the SNPmatch parser +snpmatch parser -i intput_file -o output_npz ``` @@ -71,6 +73,3 @@ SNPmatch can be run directly for A. thaliana researchers as a web tool, [AraGeno - Rahul Pisupati (rahul.pisupati[at]gmi.oeaw.ac.at) - Ümit Seren (uemit.seren[at]gmi.oeaw.ac.at) - -## License -MIT license diff --git a/setup.py b/setup.py index 20e8e9a..8858175 100644 --- a/setup.py +++ b/setup.py @@ -5,17 +5,17 @@ here = path.abspath(path.dirname(__file__)) # Get the long description from the relevant file -with open(path.join(here, 'README.rst'), encoding='utf-8') as f: +with open(path.join(here, 'README.md'), encoding='utf-8') as f: long_description = f.read() setup( name='SNPmatch', version='1.7.0', - description='A tool to get maximum likely accession in database', + description='A simple python library to identify the most likely strain given the SNPs for a sample', long_description=long_description, - url='https://github.com/Gregor-Mendel-Institute/snpmatch', + url='https://github.com/Gregor-Mendel-Institute/SNPmatch', author=['Rahul Pisupati'], - author_email='rahul.bharadwaj.p@gmail.com', + author_email='rahul.pisupati@gmi.oeaw.ac.at', license='GMI', classifiers=[ 'Development Status :: 5 - Production/Stable',