medi.yml

name: medi
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python>=3.8
  - nextflow>=23.10.0
  - fastp
  - kraken2==2.1.3
  - bracken==2.6.0
  - prodigal
  - multiqc
  - biopython
  - sourmash
  - pandas
  - r-base
  - r-data.table
  - r-reutils
  - r-r.utils
  - r-rcurl
  - r-magrittr
  - r-futile.logger
  - bioconductor-biostrings
  - taxonkit
  - architeuthis>=0.2.1