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food_human_foods.yaml
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id: http://w3id.org/mixs/food_human_foods
name: food_human_foods
imports:
- linkml:types
- terms
prefixes:
linkml: https://w3id.org/linkml/
mixs.vocab: https://w3id.org/mixs/vocab/
MIXS: https://w3id.org/mixs/terms/
default_prefix: mixs.vocab
slots: {}
classes:
food-human foods:
description: food-human foods
mappings: []
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- samp_collect_device
- organism_count
- spikein_count
- samp_stor_temp
- samp_stor_dur
- pool_dna_extracts
- samp_stor_loc
- genetic_mod
- perturbation
- coll_site_geo_feat
- food_product_type
- IFSAC_category
- ferm_chem_add
- ferm_chem_add_perc
- ferm_headspace_oxy
- ferm_medium
- ferm_pH
- ferm_rel_humidity
- ferm_temp
- ferm_time
- ferm_vessel
- bacterial_density
- cons_food_stor_dur
- cons_food_stor_temp
- cons_purch_date
- cons_qty_purchased
- cult_isol_date
- cult_result
- cult_result_org
- cult_target
- dietary_claim_use
- enrichment_protocol
- food_additive
- food_allergen_label
- food_contact_surf
- food_contain_wrap
- food_cooking_proc
- food_dis_point
- food_ingredient
- food_name_status
- food_origin
- food_pack_capacity
- food_pack_integrity
- food_pack_medium
- food_preserv_proc
- food_prior_contact
- food_prod
- food_prod_synonym
- food_product_qual
- food_quality_date
- food_source
- food_trace_list
- food_trav_mode
- food_trav_vehic
- food_treat_proc
- HACCP_term
- intended_consumer
- library_prep_kit
- lot_number
- microb_cult_med
- microb_start
- microb_start_count
- microb_start_inoc
- microb_start_prep
- microb_start_source
- microb_start_taxID
- nucl_acid_ext_kit
- num_samp_collect
- part_plant_animal
- repository_name
- sample_collec_method
- samp_pooling
- samp_rep_biol
- samp_rep_tech
- samp_source_mat_cat
- samp_stor_device
- samp_stor_media
- samp_transport_cont
- samp_transport_dur
- samp_transport_temp
- samp_purpose
- sequencing_kit
- sequencing_location
- serovar_or_serotype
- spikein_AMR
- spikein_antibiotic
- spikein_growth_med
- spikein_metal
- spikein_org
- spikein_serovar
- spikein_strain
- study_design
- study_inc_dur
- study_inc_temp
- study_timecourse
- study_tmnt
- timepoint
- misc_param
slot_usage:
samp_name:
required: true
project_name:
required: true
lat_lon:
required: true
geo_loc_name:
required: true
collection_date:
required: true
env_broad_scale:
required: true
env_local_scale:
required: true
env_medium:
required: true
seq_meth:
required: true
samp_size:
required: false
samp_collect_device:
required: false
experimental_factor:
required: false
nucl_acid_ext:
required: false
organism_count:
required: false
spikein_count:
required: false
samp_stor_temp:
required: false
samp_stor_dur:
required: false
samp_vol_we_dna_ext:
required: false
pool_dna_extracts:
required: false
temp:
required: false
samp_stor_loc:
required: false
genetic_mod:
required: false
perturbation:
required: false
coll_site_geo_feat:
required: true
food_product_type:
required: true
IFSAC_category:
required: true
ferm_chem_add:
required: false
ferm_chem_add_perc:
required: false
ferm_headspace_oxy:
required: false
ferm_medium:
required: false
ferm_pH:
required: false
ferm_rel_humidity:
required: false
ferm_temp:
required: false
ferm_time:
required: false
ferm_vessel:
required: false
bacterial_density:
required: false
cons_food_stor_dur:
required: false
cons_food_stor_temp:
required: false
cons_purch_date:
required: false
cons_qty_purchased:
required: false
cult_isol_date:
required: false
cult_result:
required: false
cult_result_org:
required: false
cult_target:
required: false
dietary_claim_use:
required: false
enrichment_protocol:
required: false
food_additive:
required: false
food_allergen_label:
required: false
food_contact_surf:
required: false
food_contain_wrap:
required: false
food_cooking_proc:
required: false
food_dis_point:
required: false
food_ingredient:
required: false
food_name_status:
required: false
food_origin:
required: false
food_pack_capacity:
required: false
food_pack_integrity:
required: false
food_pack_medium:
required: false
food_preserv_proc:
required: false
food_prior_contact:
required: false
food_prod:
required: false
food_prod_synonym:
required: false
food_product_qual:
required: false
food_quality_date:
required: false
food_source:
required: false
food_trace_list:
required: false
food_trav_mode:
required: false
food_trav_vehic:
required: false
food_treat_proc:
required: false
HACCP_term:
required: false
intended_consumer:
required: false
library_prep_kit:
required: false
lot_number:
required: false
microb_cult_med:
required: false
microb_start:
required: false
microb_start_count:
required: false
microb_start_inoc:
required: false
microb_start_prep:
required: false
microb_start_source:
required: false
microb_start_taxID:
required: false
nucl_acid_ext_kit:
required: false
num_samp_collect:
required: false
part_plant_animal:
required: false
repository_name:
required: false
sample_collec_method:
required: false
samp_pooling:
required: false
samp_rep_biol:
required: false
samp_rep_tech:
required: false
samp_source_mat_cat:
required: false
samp_stor_device:
required: false
samp_stor_media:
required: false
samp_transport_cont:
required: false
samp_transport_dur:
required: false
samp_transport_temp:
required: false
samp_purpose:
required: false
sequencing_kit:
required: false
sequencing_location:
required: false
serovar_or_serotype:
required: false
spikein_AMR:
required: false
spikein_antibiotic:
required: false
spikein_growth_med:
required: false
spikein_metal:
required: false
spikein_org:
required: false
spikein_serovar:
required: false
spikein_strain:
required: false
study_design:
required: false
study_inc_dur:
required: false
study_inc_temp:
required: false
study_timecourse:
required: false
study_tmnt:
required: false
timepoint:
required: false
misc_param:
required: false
subsets: {}
enums: {}