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core.yaml
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id: http://w3id.org/mixs/core
name: core
imports:
- linkml:types
- terms
prefixes:
linkml: https://w3id.org/linkml/
mixs.vocab: https://w3id.org/mixs/vocab/
MIXS: https://w3id.org/mixs/terms/
default_prefix: mixs.vocab
slots: {}
classes:
core:
description: Core package. Do not use this directly, this is used to build other
packages
slots:
- samp_name
- samp_taxon_id
- project_name
- experimental_factor
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- neg_cont_type
- pos_cont_type
- env_broad_scale
- env_local_scale
- env_medium
- subspecf_gen_lin
- ploidy
- num_replicons
- extrachrom_elements
- estimated_size
- ref_biomaterial
- source_mat_id
- pathogenicity
- biotic_relationship
- specific_host
- host_spec_range
- host_disease_stat
- trophic_level
- propagation
- encoded_traits
- rel_to_oxygen
- isol_growth_condt
- samp_collec_device
- samp_collec_method
- samp_mat_process
- size_frac
- samp_size
- samp_vol_we_dna_ext
- source_uvig
- virus_enrich_appr
- nucl_acid_ext
- nucl_acid_amp
- lib_size
- lib_reads_seqd
- lib_layout
- lib_vector
- lib_screen
- target_gene
- target_subfragment
- pcr_primers
- mid
- adapters
- pcr_cond
- seq_meth
- seq_quality_check
- chimera_check
- tax_ident
- assembly_qual
- assembly_name
- assembly_software
- annot
- number_contig
- feat_pred
- ref_db
- sim_search_meth
- tax_class
- x_16s_recover
- x_16s_recover_software
- trnas
- trna_ext_software
- compl_score
- compl_software
- compl_appr
- contam_score
- contam_screen_input
- contam_screen_param
- decontam_software
- sort_tech
- single_cell_lysis_appr
- single_cell_lysis_prot
- wga_amp_appr
- wga_amp_kit
- bin_param
- bin_software
- reassembly_bin
- mag_cov_software
- vir_ident_software
- pred_genome_type
- pred_genome_struc
- detec_type
- otu_class_appr
- otu_seq_comp_appr
- otu_db
- host_pred_appr
- host_pred_est_acc
- associated resource
- sop
subsets: {}
enums: {}