{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":571435620,"defaultBranch":"master","name":"G2PT","ownerLogin":"GIST-CSBL","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-11-28T05:52:48.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/20834611?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1706644440.0","currentOid":""},"activityList":{"items":[{"before":"4a55ed5dff07be2f8378188690731b30cfdefeb9","after":"5903559472fda3cafbd03461d5de55452ea1e91c","ref":"refs/heads/master","pushedAt":"2024-07-29T18:13:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Update code (final version)","shortMessageHtmlLink":"Update code (final version)"}},{"before":"b4df8c4ee3efe3e3fb887b675cc416a0138f93c6","after":"4a55ed5dff07be2f8378188690731b30cfdefeb9","ref":"refs/heads/master","pushedAt":"2024-07-23T23:09:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Fix environment (make it minimal)","shortMessageHtmlLink":"Fix environment (make it minimal)"}},{"before":"37fea41e2eaa27f2c42ae5c30d7850e99d526a6b","after":"b4df8c4ee3efe3e3fb887b675cc416a0138f93c6","ref":"refs/heads/master","pushedAt":"2024-07-23T21:59:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Fix some bug.","shortMessageHtmlLink":"Fix some bug."}},{"before":"4d14c786c41d30811e2338e030dc165c9bbc3e0d","after":"37fea41e2eaa27f2c42ae5c30d7850e99d526a6b","ref":"refs/heads/master","pushedAt":"2024-02-19T23:12:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"get attention from HiTR, add age, age square normalization to dataset","shortMessageHtmlLink":"get attention from HiTR, add age, age square normalization to dataset"}},{"before":"9ee1fa902b5463b8e8351967736439e2ffc0c3d7","after":"4d14c786c41d30811e2338e030dc165c9bbc3e0d","ref":"refs/heads/master","pushedAt":"2024-02-09T23:44:10.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"change sys2sys activation to sigmoid","shortMessageHtmlLink":"change sys2sys activation to sigmoid"}},{"before":"744076f66ff8ff8ef0c72335fe977c379abb8d0a","after":"9ee1fa902b5463b8e8351967736439e2ffc0c3d7","ref":"refs/heads/master","pushedAt":"2024-02-01T00:09:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"add clip_norm","shortMessageHtmlLink":"add clip_norm"}},{"before":"cacb100c710661e8f656db8e38ab44adb93f1bab","after":"ddc1a4513ba5b531d13f7ca8d8e3b8eea89f9136","ref":"refs/heads/tree_sampling","pushedAt":"2024-01-31T23:44:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"adding padding embedding when load embeddings","shortMessageHtmlLink":"adding padding embedding when load embeddings"}},{"before":null,"after":"cacb100c710661e8f656db8e38ab44adb93f1bab","ref":"refs/heads/tree_sampling","pushedAt":"2024-01-30T19:54:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"add subtree_sampling methods","shortMessageHtmlLink":"add subtree_sampling methods"}},{"before":"50c7ef1afede2003aefaecd4fa485de45c90ce4e","after":"744076f66ff8ff8ef0c72335fe977c379abb8d0a","ref":"refs/heads/master","pushedAt":"2024-01-30T19:24:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"add `build_cellline_drug_pair` and `get_crispr_cellline` function","shortMessageHtmlLink":"add build_cellline_drug_pair and get_crispr_cellline function"}},{"before":"cb4808a6da266cb1a8826c8d52ee93f7e4f189f1","after":"50c7ef1afede2003aefaecd4fa485de45c90ce4e","ref":"refs/heads/master","pushedAt":"2023-12-12T17:13:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"add attention","shortMessageHtmlLink":"add attention"}},{"before":"b87a416acc3faef38560c81b0027b1e7787007ed","after":"cb4808a6da266cb1a8826c8d52ee93f7e4f189f1","ref":"refs/heads/master","pushedAt":"2023-12-12T17:12:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"change to model and parser for small number of snp and consider only a1\n\ncan deal with large ontology","shortMessageHtmlLink":"change to model and parser for small number of snp and consider only a1"}},{"before":"f8398d4287f5f2382b45f2b6058192d7d696aa91","after":"b87a416acc3faef38560c81b0027b1e7787007ed","ref":"refs/heads/master","pushedAt":"2023-09-29T00:29:53.000Z","pushType":"push","commitsCount":21,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master'\n\n# Conflicts:\n#\tsrc/model/compound/compound2systems.py\n#\tsrc/model/drug_response_model.py\n#\tsrc/model/genotype2phenotype_model.py\n#\tsrc/model/hierarchical_transformer/__init__.py\n#\tsrc/model/hierarchical_transformer/attention.py\n#\tsrc/model/hierarchical_transformer/hierarchical_transformer.py\n#\tsrc/model/model/g2pt.py\n#\tsrc/utils/data/__init__.py\n#\tsrc/utils/data/dataset/DRDataset.py\n#\tsrc/utils/trainer/__init__.py\n#\tsrc/utils/trainer/drug_response_trainer.py\n#\tsrc/utils/trainer/g2p_trainer.py\n#\tsrc/utils/tree/tree.py\n#\ttrain_drug_response_model.py\n#\ttrain_g2p_model.py","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master'"}},{"before":"52ac4723834f4777e44cc8edd3e080fb02c58752","after":"083009cc8d738f0117f67bd533e86e89cd88f103","ref":"refs/heads/G2PT_fewshot","pushedAt":"2023-09-25T20:53:48.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"change to kernel like methods","shortMessageHtmlLink":"change to kernel like methods"}},{"before":"9b578e03cc697c1494e745d31d0c3a0b88809cbf","after":"52ac4723834f4777e44cc8edd3e080fb02c58752","ref":"refs/heads/G2PT_fewshot","pushedAt":"2023-08-09T21:42:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Almost successful!","shortMessageHtmlLink":"Almost successful!"}},{"before":null,"after":"9b578e03cc697c1494e745d31d0c3a0b88809cbf","ref":"refs/heads/G2PT_fewshot","pushedAt":"2023-08-08T22:50:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"change invert prediction and loss","shortMessageHtmlLink":"change invert prediction and loss"}},{"before":"a401db5b7f36c2c2c7552b386fe957f0d0787137","after":"f8398d4287f5f2382b45f2b6058192d7d696aa91","ref":"refs/heads/master","pushedAt":"2023-07-07T22:50:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlsrnsi","name":"Ingoo Lee","path":"/dlsrnsi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7012023?s=80&v=4"},"commit":{"message":"Final Version of G2PT, DR + G2P model","shortMessageHtmlLink":"Final Version of G2PT, DR + G2P model"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEjDLOAwA","startCursor":null,"endCursor":null}},"title":"Activity ยท GIST-CSBL/G2PT"}