feat: Separate Mobile and Immobile Parts of Aggregate Species Concentrations #10
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This PR aims to separate the mobile and immobile parts of each aggregate species in HPCReact. It is motivated by the fact that in some systems, the secondary species can be either mobile or immobile, so when doing reaction transport on the aggregate species concentrations, we should only transport the mobile part in the flux assembly while use the entire aggregate concentration in the accumulation assembly.
The main changes include:
m_mobileSecondarySpeciesFlag
in bothEquilibriumReactionsParameters
andMixedReactionParameters
to indicate the mobility of the secondary species:1
if mobile and0
if immobile.massActions
that separates the update for the total and mobile aggregate species concentration.massActions
in the mixed system update.