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Add a test for the empty partition behaviour.
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‎tests/empty_partitions/Makefile

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FLMLMODEL = empty_partitions
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default: input
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input:
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# gmsh -2 -bin square.geo
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clean: clean-mesh clean-run-debug
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clean-mesh:
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# rm -f *.ele *.edge *.node *.msh *.halo
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clean-run:
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rm -f $(FLMLMODEL)_?*.pvtu $(FLMLMODEL)_?*.vtu
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rm -f $(FLMLMODEL).detectors $(FLMLMODEL).stat tmpf*
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rm -f fluidity.err-?* fluidity.log-?*
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rm -f matrixdump matrixdump.info
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rm -f $(FLMLMODEL)_?*_checkpoint.flml
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rm -f $(FLMLMODEL)_?*_checkpoint_?*.ele $(FLMLMODEL)_?*_checkpoint_?*.edge $(FLMLMODEL)_?*_checkpoint_?*.halo $(FLMLMODEL)_?*_checkpoint_?*.node
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rm -f $(FLMLMODEL)_?*_?*_checkpoint.pvtu $(FLMLMODEL)_?*_?*_checkpoint.vtu
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rm -f $(FLMLMODEL)_?*_checkpoint.ele $(FLMLMODEL)_?*_checkpoint.edge $(FLMLMODEL)_?*_checkpoint.node
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rm -f $(FLMLMODEL)_?*_checkpoint.vtu
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rm -rf $(FLMLMODEL)_?*
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clean-run-debug: clean-run
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rm -f adapted_mesh_?*.vtu bounding_box_?*_?*.vtu final_metric_?*.vtu gmon.out gradation_metric_?*.vtu interpolation_metric_final_?*.vtu interpolation_metric_hessian_?*_?*.vtu interpolation_metric_merge_?*_?*.vtu interpolation_metric_metric_?*_?*.vtu metric_input_?*_?*.vtu
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rm -f adapted_mesh.edge adapted_mesh.ele adapted_mesh.node
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rm -f adapted_mesh_?*.edge adapted_mesh_?*.ele adapted_mesh_?*.node
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rm -f adapted_state_?*.pvtu adapted_state_?*.vtu

‎tests/empty_partitions/empty_partitions.flml

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<?xml version='1.0' encoding='utf-8'?>
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<fluidity_options>
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<simulation_name>
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<string_value lines="1">empty_partitions</string_value>
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</simulation_name>
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<problem_type>
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<string_value lines="1">fluids</string_value>
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</problem_type>
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<geometry>
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<dimension>
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<integer_value rank="0">2</integer_value>
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</dimension>
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<mesh name="CoordinateMesh">
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<from_file file_name="square">
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<format name="gmsh"/>
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<stat>
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<include_in_stat/>
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</stat>
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</from_file>
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</mesh>
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<mesh name="P0">
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<from_mesh>
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<mesh name="CoordinateMesh"/>
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<mesh_shape>
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<polynomial_degree>
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<integer_value rank="0">0</integer_value>
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</polynomial_degree>
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</mesh_shape>
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<mesh_continuity>
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<string_value>discontinuous</string_value>
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</mesh_continuity>
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<stat>
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<exclude_from_stat/>
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</stat>
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</from_mesh>
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</mesh>
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<quadrature>
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<degree>
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<integer_value rank="0">5</integer_value>
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</degree>
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</quadrature>
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</geometry>
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<io>
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<dump_format>
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<string_value>vtk</string_value>
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</dump_format>
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<dump_period>
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<constant>
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<real_value rank="0">0</real_value>
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</constant>
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</dump_period>
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<output_mesh name="CoordinateMesh"/>
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<checkpointing>
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<checkpoint_period_in_dumps>
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<integer_value rank="0">2</integer_value>
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</checkpoint_period_in_dumps>
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</checkpointing>
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<stat/>
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</io>
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<timestepping>
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<current_time>
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<real_value rank="0">0.0</real_value>
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</current_time>
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<timestep>
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<real_value rank="0">1.0</real_value>
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</timestep>
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<finish_time>
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<real_value rank="0">4.0</real_value>
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</finish_time>
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</timestepping>
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<material_phase name="Fluid">
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<equation_of_state>
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<fluids>
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<linear>
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<reference_density>
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<real_value rank="0">1.0</real_value>
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</reference_density>
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</linear>
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</fluids>
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</equation_of_state>
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<scalar_field name="Pressure" rank="0">
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<prognostic>
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<mesh name="CoordinateMesh"/>
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<spatial_discretisation>
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<continuous_galerkin/>
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</spatial_discretisation>
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<scheme>
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<poisson_pressure_solution>
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<string_value lines="1">only first timestep</string_value>
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</poisson_pressure_solution>
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<use_projection_method/>
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</scheme>
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<solver>
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<iterative_method name="cg"/>
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<preconditioner name="sor"/>
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<relative_error>
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<real_value rank="0">1.0e-7</real_value>
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</relative_error>
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<max_iterations>
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<integer_value rank="0">1000</integer_value>
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</max_iterations>
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<never_ignore_solver_failures/>
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<diagnostics>
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<monitors/>
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</diagnostics>
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</solver>
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<output/>
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<stat/>
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<convergence>
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<include_in_convergence/>
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</convergence>
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<detectors>
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<exclude_from_detectors/>
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</detectors>
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<steady_state>
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<include_in_steady_state/>
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</steady_state>
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<no_interpolation/>
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</prognostic>
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</scalar_field>
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<scalar_field name="Density" rank="0">
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<diagnostic>
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<algorithm name="Internal" material_phase_support="multiple"/>
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<mesh name="CoordinateMesh"/>
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<output/>
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<stat/>
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<convergence>
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<include_in_convergence/>
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</convergence>
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<detectors>
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<include_in_detectors/>
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</detectors>
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<steady_state>
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<include_in_steady_state/>
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</steady_state>
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</diagnostic>
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</scalar_field>
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<vector_field name="Velocity" rank="1">
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<prognostic>
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<mesh name="CoordinateMesh"/>
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<equation name="Boussinesq"/>
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<spatial_discretisation>
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<continuous_galerkin>
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<stabilisation>
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<no_stabilisation/>
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</stabilisation>
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<mass_terms>
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<lump_mass_matrix/>
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</mass_terms>
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<advection_terms/>
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<stress_terms>
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<tensor_form/>
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</stress_terms>
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<buoyancy/>
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</continuous_galerkin>
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<conservative_advection>
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<real_value rank="0">1.0</real_value>
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</conservative_advection>
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</spatial_discretisation>
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<temporal_discretisation>
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<theta>
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<real_value rank="0">0.0</real_value>
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</theta>
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<relaxation>
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<real_value rank="0">1.0</real_value>
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</relaxation>
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</temporal_discretisation>
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<solver>
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<iterative_method name="gmres"/>
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<preconditioner name="sor"/>
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<relative_error>
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<real_value rank="0">1.0e-7</real_value>
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</relative_error>
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<max_iterations>
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<integer_value rank="0">1000</integer_value>
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</max_iterations>
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<never_ignore_solver_failures/>
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<diagnostics>
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<monitors/>
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</diagnostics>
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</solver>
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<initial_condition name="WholeMesh">
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<constant>
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<real_value shape="2" dim1="dim" rank="1">0 0</real_value>
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</constant>
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</initial_condition>
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<output/>
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<stat>
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<include_in_stat/>
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<previous_time_step>
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<exclude_from_stat/>
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</previous_time_step>
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<nonlinear_field>
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<exclude_from_stat/>
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</nonlinear_field>
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</stat>
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<convergence>
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<include_in_convergence/>
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</convergence>
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<detectors>
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<include_in_detectors/>
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</detectors>
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<steady_state>
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<include_in_steady_state/>
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</steady_state>
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<consistent_interpolation/>
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</prognostic>
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</vector_field>
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<scalar_field name="NodeOwner" rank="0">
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<diagnostic>
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<algorithm legacy="true" name="Internal" material_phase_support="multiple"/>
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<mesh name="CoordinateMesh"/>
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<output/>
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<stat/>
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<convergence>
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<include_in_convergence/>
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</convergence>
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<detectors>
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<include_in_detectors/>
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</detectors>
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<steady_state>
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<include_in_steady_state/>
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</steady_state>
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</diagnostic>
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</scalar_field>
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</material_phase>
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<mesh_adaptivity>
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<hr_adaptivity>
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<period_in_timesteps>
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<integer_value rank="0">1</integer_value>
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</period_in_timesteps>
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<maximum_number_of_nodes>
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<integer_value rank="0">1000000</integer_value>
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</maximum_number_of_nodes>
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<enable_gradation/>
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<tensor_field name="MinimumEdgeLengths">
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<anisotropic_symmetric>
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<python>
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<string_value lines="20" type="code" language="python">def val(X,t):
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a = 1.0/max(1.0,0.5*t*t)
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return [[a,0],[0,a]]</string_value>
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</python>
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</anisotropic_symmetric>
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</tensor_field>
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<tensor_field name="MaximumEdgeLengths">
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<anisotropic_symmetric>
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<python>
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<string_value lines="20" type="code" language="python">def val(X,t):
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a = 1.0/max(1.0,0.5*t*t)
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return [[a,0],[0,a]]</string_value>
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</python>
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</anisotropic_symmetric>
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</tensor_field>
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</hr_adaptivity>
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</mesh_adaptivity>
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</fluidity_options>

‎tests/empty_partitions/empty_partitions.stat

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<header>
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<constant name="FluidityVersion" type="string" value="allow_empty_partitions:6057376d68b9850eabb07d70ed2f24385c822e3c" />
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<constant name="CompileTime" type="string" value="Aug 9 2017 14:02:17" />
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<constant name="StartTime" type="string" value="20170811 173340.294+0100" />
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<constant name="HostName" type="string" value="Unknown" />
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<constant name="format" type="string" value="plain_text" />
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<field column="1" name="ElapsedTime" statistic="value"/>
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<field column="2" name="dt" statistic="value"/>
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<field column="3" name="ElapsedWallTime" statistic="value"/>
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<field column="4" name="CoordinateMesh" statistic="nodes"/>
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<field column="5" name="CoordinateMesh" statistic="elements"/>
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<field column="6" name="CoordinateMesh" statistic="surface_elements"/>
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<field column="7" name="TotalMemory" statistic="current" material_phase="Memory"/>
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<field column="8" name="TotalMemory" statistic="min" material_phase="Memory"/>
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<field column="9" name="TotalMemory" statistic="max" material_phase="Memory"/>
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<field column="10" name="MeshMemory" statistic="current" material_phase="Memory"/>
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<field column="11" name="MeshMemory" statistic="min" material_phase="Memory"/>
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<field column="12" name="MeshMemory" statistic="max" material_phase="Memory"/>
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<field column="13" name="ScalarFieldMemory" statistic="current" material_phase="Memory"/>
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<field column="14" name="ScalarFieldMemory" statistic="min" material_phase="Memory"/>
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<field column="15" name="ScalarFieldMemory" statistic="max" material_phase="Memory"/>
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<field column="16" name="VectorFieldMemory" statistic="current" material_phase="Memory"/>
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<field column="17" name="VectorFieldMemory" statistic="min" material_phase="Memory"/>
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<field column="18" name="VectorFieldMemory" statistic="max" material_phase="Memory"/>
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<field column="19" name="TensorFieldMemory" statistic="current" material_phase="Memory"/>
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<field column="20" name="TensorFieldMemory" statistic="min" material_phase="Memory"/>
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<field column="21" name="TensorFieldMemory" statistic="max" material_phase="Memory"/>
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<field column="22" name="MatrixSparsityMemory" statistic="current" material_phase="Memory"/>
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<field column="23" name="MatrixSparsityMemory" statistic="min" material_phase="Memory"/>
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<field column="24" name="MatrixSparsityMemory" statistic="max" material_phase="Memory"/>
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<field column="25" name="MatrixMemory" statistic="current" material_phase="Memory"/>
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<field column="26" name="MatrixMemory" statistic="min" material_phase="Memory"/>
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<field column="27" name="MatrixMemory" statistic="max" material_phase="Memory"/>
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<field column="28" name="TransformCacheMemory" statistic="current" material_phase="Memory"/>
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<field column="29" name="TransformCacheMemory" statistic="min" material_phase="Memory"/>
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<field column="30" name="TransformCacheMemory" statistic="max" material_phase="Memory"/>
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<field column="31" name="Pressure" statistic="min" material_phase="Fluid"/>
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<field column="32" name="Pressure" statistic="max" material_phase="Fluid"/>
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<field column="33" name="Pressure" statistic="l2norm" material_phase="Fluid"/>
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<field column="34" name="Pressure" statistic="integral" material_phase="Fluid"/>
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<field column="35" name="Density" statistic="min" material_phase="Fluid"/>
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<field column="36" name="Density" statistic="max" material_phase="Fluid"/>
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<field column="37" name="Density" statistic="l2norm" material_phase="Fluid"/>
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<field column="38" name="Density" statistic="integral" material_phase="Fluid"/>
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<field column="39" name="NodeOwner" statistic="min" material_phase="Fluid"/>
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<field column="40" name="NodeOwner" statistic="max" material_phase="Fluid"/>
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<field column="41" name="NodeOwner" statistic="l2norm" material_phase="Fluid"/>
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<field column="42" name="NodeOwner" statistic="integral" material_phase="Fluid"/>
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<field column="43" name="Velocity%magnitude" statistic="min" material_phase="Fluid"/>
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<field column="44" name="Velocity%magnitude" statistic="max" material_phase="Fluid"/>
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<field column="45" name="Velocity%magnitude" statistic="l2norm" material_phase="Fluid"/>
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<field column="46" name="Velocity%1" statistic="min" material_phase="Fluid"/>
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<field column="47" name="Velocity%1" statistic="max" material_phase="Fluid"/>
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<field column="48" name="Velocity%1" statistic="l2norm" material_phase="Fluid"/>
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<field column="49" name="Velocity%1" statistic="integral" material_phase="Fluid"/>
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<field column="50" name="Velocity%2" statistic="min" material_phase="Fluid"/>
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<field column="51" name="Velocity%2" statistic="max" material_phase="Fluid"/>
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<field column="52" name="Velocity%2" statistic="l2norm" material_phase="Fluid"/>
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<field column="53" name="Velocity%2" statistic="integral" material_phase="Fluid"/>
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</header>
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0.10000000000000000E+001 0.10000000000000000E+001 0.13100000000000001E+000 4 2 4 0.20440000000000000E+004 0.00000000000000000E+000 0.23480000000000000E+004 0.25600000000000000E+003 0.00000000000000000E+000 0.25600000000000000E+003 0.13600000000000000E+003 0.00000000000000000E+000 0.26400000000000000E+003 0.14400000000000000E+003 0.00000000000000000E+000 0.33600000000000000E+003 0.38400000000000000E+003 0.00000000000000000E+000 0.41600000000000000E+003 0.33200000000000000E+003 0.00000000000000000E+000 0.33200000000000000E+003 0.50400000000000000E+003 0.00000000000000000E+000 0.61600000000000000E+003 0.28800000000000000E+003 0.00000000000000000E+000 0.28800000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.40000000000000000E+001 0.25819888974716108E+001 0.25000000000000000E+001 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000
62+
0.20000000000000000E+001 0.10000000000000000E+001 0.48529999999999998E+001 4 2 4 0.26800000000000000E+003 0.23600000000000000E+003 0.21440000000000000E+004 0.00000000000000000E+000 0.00000000000000000E+000 0.58400000000000000E+003 0.80000000000000000E+001 0.00000000000000000E+000 0.16800000000000000E+003 0.16000000000000000E+002 0.00000000000000000E+000 0.28800000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.51200000000000000E+003 0.16000000000000000E+002 0.80000000000000000E+001 0.46400000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.54400000000000000E+003 0.22800000000000000E+003 0.14400000000000000E+003 0.28800000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000
63+
0.30000000000000000E+001 0.10000000000000000E+001 0.91509999999999998E+001 5 4 4 0.32800000000000000E+003 0.24000000000000000E+003 0.32120000000000000E+004 0.00000000000000000E+000 0.00000000000000000E+000 0.10880000000000000E+004 0.80000000000000000E+001 0.00000000000000000E+000 0.15200000000000000E+003 0.16000000000000000E+002 0.00000000000000000E+000 0.36800000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.80000000000000000E+003 0.16000000000000000E+002 0.80000000000000000E+001 0.74000000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.14400000000000000E+003 0.28800000000000000E+003 0.14400000000000000E+003 0.28800000000000000E+003 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000
64+
0.40000000000000000E+001 0.10000000000000000E+001 0.13734000000000000E+002 9 8 8 0.63400000000000000E+004 0.30000000000000000E+003 0.70600000000000000E+004 0.83200000000000000E+003 0.00000000000000000E+000 0.23680000000000000E+004 0.29600000000000000E+003 0.00000000000000000E+000 0.58400000000000000E+003 0.30400000000000000E+003 0.00000000000000000E+000 0.73600000000000000E+003 0.86400000000000000E+003 0.00000000000000000E+000 0.14400000000000000E+004 0.94000000000000000E+003 0.12000000000000000E+002 0.15400000000000000E+004 0.20480000000000000E+004 0.00000000000000000E+000 0.23760000000000000E+004 0.10560000000000000E+004 0.14400000000000000E+003 0.10560000000000000E+004 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.10000000000000000E+001 0.40000000000000000E+001 0.22032173444003806E+001 0.20833333333333330E+001 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000 0.00000000000000000E+000

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