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RNAmodR.AlkAnilineSeq Build Status codecov

RNAmodR.AlkAnilineSeq uses classes and workflows from RNAmodR to detect m7G, m3C and D in RNASeq data specifically treated according to the AlkAnilineSeq protocol.

The vignette from the RNAmodR.AlkAnilineSeq package provides details on the specific analysis of AlkAnilineSeq data. Have a look at the vignette from the RNAmodR package for a general description on the provided workflows.

Installation

The current version of the RNAmodR.AlkAnilineSeq package is available from Bioconductor.

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.AlkAnilineSeq")
library(RNAmodR.AlkAnilineSeq)

Literature

  • Marchand, Virginie, Lilia Ayadi, Felix G. M. Ernst, Jasmin Hertler, Valérie Bourguignon-Igel, Adeline Galvanin, Annika Kotter, Mark Helm, Denis L. J. Lafontaine, and Yuri Motorin. 2018. “AlkAniline-Seq: Profiling of m7G and m3C Rna Modifications at Single Nucleotide Resolution.” Angewandte Chemie International Edition 57 (51): 16785–90. https://doi.org/10.1002/anie.201810946.