chb-connectome

# First source  freesurfer environment
source  /chb/arch/scripts/chb-fs stable

# Set the cmtk tk environment variables
OS=$(uname -a | awk '{print $1}')
echo "Host type is $HOSTTYPE-${OS}"
export PACKAGEDIR=/chb/freesurfer/${HOSTTYPE}-${OS}/packages

export DTDIR=${PACKAGEDIR}/dtk/current/dtk
export DSI_PATH=${DTDIR}/matrices

export PYTHONPATH=/chb/arch/python/cmp/:/chb/arch/python/cfflib/:/chb/arch/python/nibabel/:/chb/arch/python/connectomeviewer/
export PATH=$PATH:/chb/arch/python/cmp/scripts:/chb/arch/python/connectomeviewer/scripts