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SRAO.obo
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format-version: 1.2
data-version: http://www.fairsharing.org/ontology/subject/SRAO/releases/2023-10-10/SRAO.owl
ontology: http://www.fairsharing.org/ontology/subject/SRAO.owl
property_value: http://purl.org/dc/elements/1.1/creator "The FAIRsharing Team, [email protected]" xsd:string
property_value: http://purl.org/dc/elements/1.1/title "FAIRsharing Subject Ontology (SRAO)" xsd:string
property_value: http://purl.org/dc/terms/description "SRAO is a hierarchy of academic disciplines that draws from the re3data subject list as well as importing terms from 6 publicly-available ontologies. This hierarchy covers all of the humanities and natural sciences and, where external vocabularies could not be found, SRAO classes were created.\n\nThe initial hierarchy and class set came from FAIRsharing user requirements. Additional classes have been drawn from the following sources:\n\n1. the re3data subject categories as listed at http://www.re3data.org/browse/by-subject/\n2. NCIT (http://dx.doi.org/10.3233/978-1-60750-949-3-33, CC BY 4.0)\n3. the EDAM Topic hierarchy as available at http://edamontology.org (http://doi.org/10.1093/bioinformatics/btt113, CC BY-SA 4.0)\n4. AgroVoc (http://agrovoc.uniroma2.it/agrovoc/agrovoc/en/, CC BY 3.0 IGO)\n5. OMIT (https://doi.org/10.1371/journal.pone.0100855 and https://doi.org/10.1186/s13326-016-0064-2, CC BY 3.0)\n6. OBI (https://doi.org/10.1371/journal.pone.0154556, CC BY 3.0)\n7. PO (http://www.plantontology.org/, CC BY 4.0)\n\nModifications to the hierarchy have been performed to aid usability within FAIRsharing as well as to aid ontology alignment and merging. Additional definitions and annotations have also been incorporated by the FAIRsharing Team.\n\nOriginally developed for use within FAIRsharing.org\n\nLicensed under the Creative Commons Attribution 4.0 International (CC BY 4.0), https://creativecommons.org/licenses/by/4.0/" xsd:string
property_value: http://purl.org/dc/terms/license CC-BY%204.0
property_value: owl:versionInfo "2023-10-10" xsd:string
[Term]
id: NCIT:C105692
name: Respiratory Medicine
def: "A medical specialty concerned with diagnosis and treatment of lung disorders and other breathing problems." []
comment: AL 20.5.20: Added as part of https://github.com/FAIRsharing/subject-ontology/issues/52
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Pulmonary Medicine" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C105699
name: Vascular Surgery
def: "A surgical specialty that focuses on diagnosis and management of disorders of the arterial, venous and lymphatic systems, other than the intracranial vessels and the heart." []
comment: AL: 16.5.2019 Refactored re3data composite class 'Vascular and Visceral Surgery' into 'Vascular Surgery' according to FAIRsharing's requirements and curation best practises.
comment: AL: 28.9.17 'Vascular and Visceral Surgery' is asserted as a child of Medicine by re3data, and has been further refined by FAIRsharing as a child of Surgery, a class originating in EDAM.
is_a: NCIT:C17173 ! Surgery
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C119712
name: Proteogenomics
def: "A method of study that relates annotated genomic information to global protein expression in order to determine the relationship between genomic sequences and both expressed proteins and predicted peptide sequences; these studies can identify novel coding regions." []
comment: AL 12.12.17 Child of Bioinformatics (to align with NCIT) and also of Genomics, to align with FAIRsharing usage.
is_a: NCIT:C17964 ! Bioinformatics
is_a: NCIT:C84343 ! Genomics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C142491
name: Data Quality
def: "The condition of information that describes its credibility, authenticity, and appropriateness for its function. Important aspects include source recognition, accuracy, innovativeness, and information on changes to the data." []
comment: AL 12.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: topic:3071 ! Data Management
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C142642
name: Preclinical Studies
def: "An investigation that tests a drug, procedure or medical treatment in animals to determine any toxic effects before trials can be carried out in humans." []
comment: AL: 16.5.2019 Refactored re3data composite class 'Preclinical and Clinical Studies' into sibling classes 'Preclinical Studies' and 'Clinical Studies' according to FAIRsharing curation best practises.
is_a: SRAO:0000318 ! Medicines Research and Development
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C15188
name: Biomedical Science
def: "Research concerned with the application of biological and physiological principles to clinical medicine." []
comment: AL: 3.12.18 'Biomedical Research' is a child of 'Research Activity' within NCIT. This assertion has been modified to 'Life Sciences' as SRAO focuses more on the subject area rather than the research activity. There was no direct equivalent for this discipline within re3data.
is_a: NCIT:C16345 ! Biology
is_a: NCIT:C19199 ! Health Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C15206
name: Clinical Studies
def: "Research conducted with human subjects or on material of human origin in which an investigator directly interacts with human subjects; includes development of new technologies, study of mechanisms of human diseases, therapy, clinical trials, epidemiologic, behavior, and health services research." []
comment: AL: 16.5.2019 Refactored re3data composite class 'Preclinical and Clinical Studies' into sibling classes 'Preclinical Studies' and 'Clinical Studies' according to FAIRsharing curation best practises.
is_a: SRAO:0000318 ! Medicines Research and Development
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C15245
name: Health Services Research
def: "A multidisciplinary field of inquiry that examines the costs, quality, accessibility, delivery, organization, financing, and outcomes of health care services." []
comment: AL: 1.5.2019 Refactored re3data composite class 'Public Health, Health Services Research, Social Medicine' into the 'Public Health' class and parts of its hierarchy according to FAIRsharing curation best practises. Child terms from this refactoring are 'Social Medicine' and 'Health Services Research'.
is_a: NCIT:C17039 ! Public Health
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C15308
name: Psychotherapy
def: "A method of treating disease, esp. psychic disorders, by mental rather than pharmacological means (e.g., suggestion, re-education, hypnotism, and psychoanalysis). (Taber's)" []
comment: AL: 4.4.2019 Refactored re3data composite class 'Clinical Neurosciences II - Psychotherapy, Psychosomatic Medicine' into sibling classes 'Psychotherapy' and 'Psychosomatic Medicine' according to FAIRsharing curation best practises.
is_a: NCIT:C95096 ! Neuroscience
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C153192
name: Glycomics
def: "A study of the complete set of glycans produced in a given cell or organism under specific conditions." []
is_a: NCIT:C17964 ! Bioinformatics
is_a: topic:3292 ! Biochemistry
is_a: topic:3391 ! Omics
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16294
name: Anthropology
def: "The branch of science concerned with origin and development of humans in all their physical, social, and cultural relationships." []
comment: AL: 11.4.2019 Refactored re3data composite class 'Non-European Languages and Cultures, Social and Cultural Anthropology, Jewish Studies and Religious Studies' and its children 'African, American and Oceania Studies', 'Asian Studies', 'Religious Studies and Jewish Studies', 'Islamic Studies, Arabian Studies, Semitic Studies', and 'Social and Cultural Anthropology and Ethnology/Folklore' into a completely reworked hierarchy of singular concepts according to FAIRsharing curation best practises.
is_a: NCIT:C17141 ! Social Science
is_a: OMIT:0007951 ! Humanities
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16304
name: Architecture
def: "The art or science of building; especially, the art of building houses, churches, bridges, and other structures, for the purposes of civil life" []
comment: AL 23.5.18: The original "Construction Engineering and Architecture" class from re3data has been split into "Construction Engineering" and "Architecture". Users have requested the single terms, and removal of compound terms aligns with FAIRsharing best practices.
is_a: c:1648 ! Civil Engineering
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16309
name: Artificial Intelligence
def: "Artificial intelligence is the branch of computer science that deals with writing computer programs that can solve problems creatively." []
comment: AL: 20.5.2019, Updated AL 8.7.19: Refactored re3data composite class 'Artificial Intelligence, Image and Language Processing' into sibling classes 'Artificial Intelligence' and 'Digital Image Processing', according to FAIRsharing curation best practises. Please note that the 'Natural Language Processing' component was not retained as it is already present within DRAO.
is_a: topic:3316 ! Computer Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16345
name: Biology
def: "The scientific study of living organisms." []
is_a: c:4318 ! Life Science
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16349
name: Biophysics
def: "Physics as applied to biological problems; an interdisciplinary science that applies theories and methods of the physical sciences to questions of biology." []
comment: AL: 14.5.2019 Refactored re3data composite class 'Statistical Physics, Soft Matter, Biological Physics, Nonlinear Dynamics'. 'Biophysics' was already present in SRAO, and added 'Soft Matter Physics', 'Nonlinear Dynamics', and 'Statistical Physics' according to FAIRsharing curation best practises.
is_a: NCIT:C16345 ! Biology
is_a: topic:3318 ! Physics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Biological Physics" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16413
name: Chemical Engineering
def: "Chemical Engineering; engineering dealing with the industrial application of chemistry. (WWWebster Dictionary)" []
is_a: NCIT:C16414 ! Chemistry
is_a: SRAO:0000219 ! Process Engineering
property_value: IAO:0000119 "WWWebster Dictionary" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16414
name: Chemistry
def: "The science of the composition, structure, properties, and reactions of matter, especially of atomic and molecular systems." []
comment: AL: 21.1.19 Chemistry is asserted as a child of 'Natural Sciences' by re3data, and a child of Physical Sciences within NCIT.
is_a: OMIT:0011790 ! Natural Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16417
name: Clinical Chemistry
def: "The department responsible for performing chemical and enzymatic analyses of body fluids and tissues. (from Handbook of Medical Informatics)" []
comment: AL 9.10.23: As described in https://github.com/FAIRsharing/subject-ontology/issues/77, this has had the direct parent 'Chemistry' removed as it was already a child of Analytical Chemistry.
comment: AL: 16.5.2019 Refactored re3data composite class 'Clinical Chemistry and Pathobiochemistry' into sibling classes 'Clinical Chemistry' and 'Pathobiochemistry' according to FAIRsharing curation best practises.
is_a: NCIT:C19199 ! Health Science
is_a: OMIT:0009577 ! Medicine
is_a: topic:3370 ! Analytical Chemistry
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000233 "https://github.com/FAIRsharing/subject-ontology/issues/77" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16419
name: Organic Chemistry
def: "A branch of chemistry that deals specifically with the structures, synthesis and reactions of carbon-containing compounds." []
is_a: NCIT:C16414 ! Chemistry
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16421
name: Physical Chemistry
def: "The branch of chemistry dealing with the physical properties of chemical substances. Chemical thermodynamics, chemical kinetics, quantum chemistry, statistical mechanics, and spectroscopy are some areas of chemistry comprising the bulk of physical chemistry." []
comment: AL: 10.4.2019 Refactored re3data composite class 'Chemical Solid State and Surface Research' into 'Physical Chemistry', and refactored all child classes and the Physical and Theoretical Chemistry hierarchies to reconcile them using non-composite terms according to FAIRsharing curation best practises.
is_a: NCIT:C16414 ! Chemistry
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16439
name: Medical Informatics
def: "The application of informatics methods to manage medical information and improve healthcare." []
comment: AL: 1.5.2019 Refactored re3data composite class 'Epidemiology, Medical Biometry, Medical Informatics' into the 'Public Health' subclass 'Epidemiology' and its sibling 'Medical Biometry' according to FAIRsharing curation best practises. 'Medical Informatics' (which was already present) is now a parent term of 'Medical Biometry', which also has Public Health as an additional parent. 'Medical informatics' was also refactored from EDAM to NCIT due to EDAM's composite term and generic synonyms.
is_a: OMIT:0009577 ! Medicine
is_a: topic:0605 ! Informatics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Clinical Informatics" xsd:string
property_value: IAO:0000118 "Health Informatics" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16478
name: Culture
def: "A pattern of learned beliefs, values, and behavior that are shared within a group. It includes language, styles of communication, practices, customs, and views on roles and relationships." []
is_a: NCIT:C17141 ! Social Science
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16495
name: Demographics
def: "The statistical characterization of human populations or segments of human populations (e.g., characterization by age, sex, race, or income)." []
comment: AL 23.11.17: Hierarchy placement based on ESRC descriptions (http://www.esrc.ac.uk/about-us/what-is-social-science/social-science-disciplines/).
is_a: NCIT:C17141 ! Social Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Population Studies" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16500
name: Dermatology
def: "The branch of medicine focused on the study of the skin, and responsible for the medical management of its associated diseases." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16501
name: Developmental Biology
def: "The study of how a multicellular organism develops from its early immature forms (e.g., zygote, larva, embryo) into an adult." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16526
name: Ecology
def: "The branch of biology concerned with the relations between organisms and their environment." []
comment: AL: 16.5.2019 Refactored (through deletion) re3data composite class 'Animal Ecology, Biodiversity and Ecosystem Research' by merging with existing classes 'Ecosystem Science', 'Biodiversity' and 'Ecology' according to FAIRsharing curation best practises.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16540
name: Electrophysiology
def: "That branch of physiology that is concerned with the electric phenomena associated with living bodies and involved in their functional activity." []
comment: AL 17.7.2019: Imported from DRAO as more appropriate within SRAO.
comment: AL 9.10.23: removed Physiology parent as already had suitable parent of Neurophysiology. See also https://github.com/FAIRsharing/subject-ontology/issues/78
is_a: NCIT:C16910 ! Neurophysiology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000233 "https://github.com/FAIRsharing/subject-ontology/issues/78" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16548
name: Engineering Science
def: "The discipline concerned with the application of scientific knowledge to solve practical issues in commerce or industry." []
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16550
name: Entomology
def: "Entomology; the branch of zoology that studies insects." []
is_a: NCIT:C17269 ! Zoology
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16556
name: Epidemiology
def: "The study of the causes, incidence and distribution of disease in the population and its application for prevention or control." []
comment: AL: 1.5.2019 Earlier releases of SRAO had an EDAM term (topic_3305) but this was refactored to NCIT to remove the composite concepts.
comment: AL: 1.5.2019 Refactored re3data composite class 'Epidemiology, Medical Biometry, Medical Informatics' into the 'Public Health' subclass 'Epidemiology' and its sibling 'Medical Biometry' according to FAIRsharing curation best practises. 'Medical Informatics' (which was already present) is now a parent term of 'Medical Biometry', which also has Public Health as an additional parent.
is_a: NCIT:C17039 ! Public Health
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16591
name: Forensic Medicine
def: "The application of medical knowledge to questions of law; research, reports and testimony in court by experts in medical science to assist in determining a legal question." []
comment: AL 27.11.18: The original "Pathology and Forensic Medicine" class from re3data has been split into "Pathology" and "Forensic Medicine". Removal of compound terms aligns with FAIRsharing best practices.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16603
name: Gastroenterology
def: "The branch of medicine that focuses on diagnosis and treatment of conditions affecting the gastrointestinal tract." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16624
name: Genetics
def: "The branch of biology that deals with heredity, especially the mechanisms of hereditary transmission and the variation of inherited characteristics among similar or related organisms" []
comment: AL (Original date unknown, updated 10.6.2019): Changed re3data label from 'General Genetics' to Genetics as this is the term used within FAIRsharing. This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16633
name: Geography
def: "The science that deals with the world and its inhabitants; a description of the earth, or a portion of the earth, including its structure, features, products, political divisions, and the people by whom it is inhabited." []
is_a: OMIT:0026615 ! Earth Science
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16658
name: Gynecology
def: "The branch of medicine that deals with the diseases and hygiene of women." []
comment: AL 1.5.2019: Refactored re3data composite class 'Gynecology and Obstetrics' into sibling classes 'Gynecology' and 'Obstetrics'. This replaced the composite EDAM IRI representing 'Gynecology and Obstetrics' with individual NCIT terms according to FAIRsharing best practises.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16673
name: Hematology
def: "The branch of medicine that deals with the blood and blood-forming organs and the diseases thereof." []
comment: AL: 1.5.2019 Refactored re3data composite class 'Hematology, Oncology, Transfusion Medicine' into sibling classes 'Hematology' and 'Oncology', and a child of Hematology called 'Transfusion Medicine' according to FAIRsharing curation best practises.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16715
name: Immunogenetics
def: "A sub-field of genetics that uses both genetic and immunological analyses to study the genetics behind antibody formation and the immune response. (Biotech Life Science Dictionary)" []
is_a: NCIT:C16624 ! Genetics
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16851
name: Microbiology
def: "The science that deals with the study of microorganisms, including algae, archaea, bacteria, fungi, protozoa, and viruses." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL: 25.9.17 [Updated AL 10.06.2019] Changed re3data label from 'Microbiology, Virology and Immunology' to 'Microbiology' as these are three distinct disciplines. All three disciplines have been removed from the Medicine hierarchy as listed by re3data. Microbiology has been asserted as a child of Biology according to NCIT and FAIRsharing curators. Virology has been asserted as a child of Microbiology to align with re3data, further refining the placement within EDAM. Immunology remains a child of Biomedical Science according to FAIRsharing curators, a modification both of the Medicine hierarchy as listed by re3data and the Biological Sciences as listed by NCIT.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16902
name: Nephrology
def: "A branch of medicine concerned with the development, anatomy, function, and dysfunction of the kidney." []
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16908
name: Neurology
def: "A branch of medicine concerned with the development, anatomy, function, and dysfunction of the nervous system." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL 28.9.17 (Updated AL 11.6.2019): Changed re3data label from 'Clinical Neurosciences I - Neurology, Neurosurgery' to Neurology as the new label is singular (non-composite). Neurology is asserted within the NCIT Medicine hierarchy and as a child of Neurobiology by re3data. The hierarchies of both have been retained.
is_a: NCIT:C95096 ! Neuroscience
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16910
name: Neurophysiology
def: "A branch of neuroscience concerned with the physiology of the nervous system." []
is_a: NCIT:C95096 ! Neuroscience
is_a: topic:3300 ! Physiology
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C16922
name: Nuclear Medicine
def: "Nuclear Medicine is the branch of medicine that uses radioactive materials either to image a patient's body or to destroy diseased cells." []
comment: AL 15.1.18: While this particular class was not directly imported from re3data, its parent class was originally named 'Radiology and Nuclear Medicine'. As NCIT has terms separately describing both concepts, FAIRsharing has split the re3data class along the hierarchy described in NCIT.
is_a: NCIT:C17059 ! Radiology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16928
name: Obstetrics
def: "A medical-surgical specialty dealing with the care of a woman and her offspring during pregnancy, childbirth and the puerperium (the period shortly after birth)." []
comment: AL 1.5.2019: Refactored re3data composite class 'Gynecology and Obstetrics' into sibling classes 'Gynecology' and 'Obstetrics'. This replaced the composite EDAM IRI representing 'Gynecology and Obstetrics' with individual NCIT terms according to FAIRsharing best practises.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16931
name: Occupational Medicine
def: "This branch of medicine is concerned with the prevention, diagnosis, and treatment of injuries and illnesses that occur at the workplace or as a result of toxic exposures, stress, or accidents at the workplace. Occupational medicine encompasses issues such as industrial hygiene, safety, pollution control, ergonomics, industrial and agricultural toxicology, disability evaluation, physical rehabilitation, industrial psychology and emergency medicine. (BioTech Life Science Dictionary)" []
comment: AL: 27.9.17 Changed re3data label from 'Toxicology and Occupational Medicine' to 'Occupational Medicine' as these are two distinct disciplines. Toxicology has been placed as a child of 'Safety Sciences', while Occupational Medicine has been kept as a child of Medicine.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16939
name: Ophthalmology
def: "A medical specialty concerned with the structure and function of the eye and the medical and surgical treatment of its defects and diseases." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL 28.9.17 (Updated AL 11.6.2019): Changed re3data label from 'Clinical Neurosciences III - Opthalmology' to Opthalmology as the new label is simpler and aligns with FAIRsharing best practises. Opthalmology is asserted within the Medicine hierarchy by NCIT and as a child of Neurobiology by re3data. Both assertions have been retained.
is_a: NCIT:C95096 ! Neuroscience
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C16974
name: Pharmacology
def: "The study of pharmacologic agents. This includes the preparation, compounding, and dispensing of drugs, as well as the characteristics and properties of drugs, their effects on the body, and how they are metabolized and eliminated from the body." []
comment: AL 10.6.2019: Pharmacology is a child of Biological Sciences within NCIT, and a child of Medicine by re3data. The re3data placement has been retained. This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17026
name: Psychiatry
def: "The medical specialty that deals with the medical management of mental disorders." []
comment: AL 12.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17027
name: Psychology
def: "The study of behavior and cognition." []
is_a: SRAO:0000041 ! Social and Behavioural Science
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17028
name: Clinical Psychology
def: "The branch of psychology that deals with the diagnosis and treatment of psychological and behavioral problems." []
comment: AL: 9.4.2019 Refactored re3data composite class 'Differential Psychology, Clinical Psychology, Medical Psychology, Methodology' into sibling classes 'Differential Psychology', 'Clinical Psychology' and 'Medical Psychology' according to FAIRsharing curation best practises.'Methodology' was not required within SRAO at this time.
is_a: NCIT:C17027 ! Psychology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17030
name: Educational Psychology
def: "A branch of psychology concerned with educational techniques and assessment of academic aptitude." []
comment: AL: 9.4.2019 Refactored re3data composite class 'Developmental and Educational Psychology' into sibling classes 'Developmental Psychology' and 'Educational Psychology' according to FAIRsharing curation best practises.
is_a: NCIT:C17027 ! Psychology
is_a: SRAO:0000042 ! Education Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17038
name: Psychosomatic Medicine
def: "A branch of medicine concerned with the relationship between emotion and body function." []
comment: AL: 4.4.2019 Refactored re3data composite class 'Clinical Neurosciences II - Psychotherapy, Psychosomatic Medicine' into sibling classes 'Psychotherapy' and 'Psychosomatic Medicine' according to FAIRsharing curation best practises.
is_a: NCIT:C17026 ! Psychiatry
is_a: NCIT:C95096 ! Neuroscience
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17039
name: Public Health
def: "The science and practice of protecting and improving the health of a community, as by preventive medicine, health education, control of communicable diseases, application of sanitary measures, and monitoring of environmental hazards." []
comment: AL: 1.5.2019 Refactored re3data composite class 'Public Health, Health Services Research, Social Medicine' into the 'Public Health' class and parts of its hierarchy according to FAIRsharing curation best practises. Child terms from this refactoring are 'Social Medicine' and 'Health Services Research'.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17055
name: Radiobiology
def: "The study of the mechanisms and biological effects of ionizing radiation, including repair processes." []
comment: AL: 16.5.2019 Refactored re3data composite class 'Radiation Oncology and Radiobiology' into parent class 'Radiobiology' and child class 'Radiation Oncology' according to FAIRsharing curation best practises.
is_a: NCIT:C16345 ! Biology
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17059
name: Radiology
def: "The branch of medical science dealing with the medical use of X-rays or other penetrating radiation." []
comment: AL 15.1.18 Originally named 'Radiology and Nuclear Medicine', but split into two separate classes (according to the NCIT hierarchy) after Radiology was required in FAIRsharing as a standalone concept.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17099
name: Rheumatology
def: "A medical specialty that deals with diagnosis and treatment of diseases and disorders of the connective tissues." []
comment: AL: 7.5.2019 Refactored re3data composite class 'Rheumatology, Clinical Immunology, Allergology' into classes 'Rheumatology' (remains child of Medicine) and 'Clinical Immunology' (child of Immunology and Health Sciences) according to FAIRsharing curation best practises.
is_a: OMIT:0010991 ! Musculoskeletal Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17141
name: Social Science
def: "Comprises the scientific study of the human aspects of the world. They are also known as social studies. Psychology studies the human mind, sociology examines human society, political science studies the governing of groups and economics concerns itself with the allocation of wealth in society." []
comment: AL 5.6.2019: The label was modified from plural to singular according to FAIRsharing best practises.
is_a: SRAO:0000041 ! Social and Behavioural Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17147
name: Software Engineering
def: "The application of a systematic, disciplined, quantifiable approach to the development, operation, and maintenance of computer software." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL: 29.9.17 Changed label from 'Software Technology' (sourced from re3data) to 'Software engineering' to align with EDAM.
is_a: topic:3316 ! Computer Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17167
name: Statistics
def: "A branch of applied mathematics concerned with the collection and interpretation of quantitative data and the use of probability theory to estimate population parameters." []
comment: AL 10.4.2019: Renamed 'Statistics and Probability' to 'Statistics' to align with FAIRsharing curation best practices.
is_a: topic:3315 ! Mathematics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Statistics and Probability" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17173
name: Surgery
def: "The branch of medical science that treats disease or injury by operative procedures." []
comment: AL 12.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17174
name: Oral Surgery
def: "Surgical procedures for treating diseases and disorders of the oral cavity." []
comment: AL: 16.5.2019 Refactored re3data composite class 'Dentistry, Oral Surgery' into 'Dentistry' (which moved to be a direct child of Medicine) and 'Oral Surgery', which retains its position as a child of Surgery, according to FAIRsharing curation best practises.
is_a: NCIT:C17173 ! Surgery
is_a: NCIT:C19199 ! Health Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17193
name: Thermodynamics
def: "The branch of physics concerned with the conversion of different forms of energy." []
comment: AL 17.7.2019: Imported from DRAO as more appropriate within SRAO. At the same time, IRI changed from http://purl.obolibrary.org/obo/OMIT_0014667 to http://purl.obolibrary.org/obo/NCIT_C17193 as it provides a definition.
is_a: topic:3318 ! Physics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17206
name: Toxicology
def: "Toxicology is the branch of pharmacology that deals with the nature and effects and treatments of poisons." []
comment: AL 10.6.2019: Added parent term of 'Pharmacology' to align with NCIT hierarchy. This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines. AL 27.9.17: Changed re3data label from 'Toxicology and Occupational Medicine' to 'Occupational Medicine' as these are two distinct disciplines. Toxicology has been placed as a child of 'Safety Sciences', while Occupational Medicine has been kept as a child of Medicine.
is_a: NCIT:C16974 ! Pharmacology
is_a: SRAO:0000318 ! Medicines Research and Development
is_a: SRAO:0000319 ! Safety Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17243
name: Urology
def: "The medical specialty concerned with the study, diagnosis, and treatment of diseases of the genitourinary tract." []
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17269
name: Zoology
def: "The branch of biology dealing with the study of animals." []
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17606
name: Digital Image Processing
def: "The use of data processing systems to analyze, enhance, interpret or display digital images." []
comment: AL: 20.5.2019 Refactored re3data composite class 'Artificial Intelligence, Image and Language Processing' into sibling classes 'Artificial Intelligence' and 'Digital Image Processing', with 'Natural Language Processing' as a child term of 'Artificial Intelligence' according to FAIRsharing curation best practises.
is_a: topic:3316 ! Computer Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17735
name: Policy
def: "A plan of action adopted by an individual or social group." []
comment: AL 21.5.2019: Added as a new parent for Social Policy and Economic Policy in a placement consistent with the NCIT hierarchy.
is_a: NCIT:C17141 ! Social Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C17837
name: Oncology
def: "The study of tumors encompassing the physical, chemical, and biologic properties." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL: 1.5.2019 Refactored re3data composite class 'Hematology, Oncology, Transfusion Medicine' into sibling classes 'Hematology' and 'Oncology', and a child of Hematology called 'Transfusion Medicine' according to FAIRsharing curation best practises.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17940
name: Microbial Genetics
def: "A branch of genetics concerned with the mechanisms and processes of heredity in microorganisms." []
comment: AL: 10.4.2019 Refactored re3data composite class 'Metabolism, Biochemistry and Genetics of Microorganisms' into sibling classes 'Microbial Genetics', ' Microbial Physiology' and 'Molecular Microbiology' according to FAIRsharing curation best practises.
is_a: NCIT:C16624 ! Genetics
is_a: NCIT:C16851 ! Microbiology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17964
name: Bioinformatics
def: "Bioinformatics derives knowledge from computer analysis of biological data. These can consist of the information stored in the genetic code, but also experimental results from various sources, patient statistics, and scientific literature. Research in bioinformatics includes method development for storage, retrieval, and analysis of the data. Bioinformatics is a rapidly developing branch of biology and is highly interdisciplinary, using techniques and concepts from informatics, statistics, mathematics, chemistry, biochemistry, physics, and linguistics. It has many practical applications in different areas of biology and medicine. (M. Nilges and Jens P. Linge, Unite de Bio-informatique Structurale, Institut Pasteur, Paris)" []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL 27.9.17 [Updated AL 10.6.2019] Bioinformatics is asserted as a child of Biology within re3data, but has also been asserted as a child of Informatics by FAIRsharing. Within FAIRsharing, this term used to be labelled 'Bioinformatics tools and formats', but has been modified for simplicity. Within re3data, this term used to be labelled 'Bioinformatics and Theoretical Biology' but was simplified as these are two distinct disciplines. Currently Theoretical Biology has not been re-introduced, but this may need to be revisited in future.
is_a: NCIT:C16345 ! Biology
is_a: topic:0605 ! Informatics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Computational Biology" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C17992
name: Cell Biology
def: "The study of the internal workings of cells at the microscopic and molecular level." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18011
name: Immunology
def: "The study of the immune system and its reaction to pathogens, as well as its malfunctions (autoimmune diseases, allergies, rejection of organ transplants)." []
comment: AL 14.5.2019: Refactored Immunology from the EDAM to the NCIT class due to conflation of subject areas by the EDAM class.
comment: AL: 25.9.17 [Updated AL 10.06.2019] Changed re3data label from 'Microbiology, Virology and Immunology' to 'Microbiology' as these are three distinct disciplines. All three disciplines have been removed from the Medicine hierarchy as listed by re3data. Microbiology has been asserted as a child of Biology according to NCIT and FAIRsharing curators. Virology has been asserted as a child of Microbiology to align with re3data, further refining the placement within EDAM. Immunology remains a child of Biomedical Science according to FAIRsharing curators, a modification both of the Medicine hierarchy as listed by re3data and the Biological Sciences as listed by NCIT.
is_a: NCIT:C15188 ! Biomedical Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18076
name: Bioengineering
def: "Bioengineering integrates physical, chemical, or mathematical sciences and engineering principles for treatment and for the study of biology, medicine, behavior, or health." []
comment: AL 23.11.17: Added parent 'Engineering Sciences' to align with the structure found within NCIT.
is_a: NCIT:C16548 ! Engineering Science
is_a: topic:3297 ! Biotechnology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Biomedical Engineering" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18088
name: Developmental Neurobiology
def: "The branch of neurobiology concerned with the changes that take place in the nervous system between fertilization and maturity." []
is_a: topic:3304 ! Neurobiology
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18097
name: Molecular Dynamics
def: "The science of simulating the motions of a system of particles. (Karplus and Petsko)" []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: topic:3307 ! Computational Biology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18111
name: Structural Biology
def: "The discipline concerned with the three-dimensional configuration of biological molecules and the influence of structure on function." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: NCIT:C16345 ! Biology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18189
name: Pathology
def: "The medical science, and specialty practice, concerned with all aspects of disease, but with special reference to the essential nature, causes, and development of abnormal conditions, as well as the structural and functional changes that result from the disease processes. Informally used to mean the result of such an examination." []
comment: AL 27.11.18: The original "Pathology and Forensic Medicine" class from re3data has been split into "Pathology" and "Forensic Medicine". Removal of compound terms aligns with FAIRsharing best practices.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18220
name: Human Biology
def: "Interdisciplinary studies involving biology, anthropology, nutrition, and medicine with a focus on humans." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
comment: AL 9.10.23: Removed parent 'Zoology' as having both that and parent of Biology could be confusing and is unnecessary. See also https://github.com/FAIRsharing/subject-ontology/issues/79
is_a: NCIT:C17269 ! Zoology
property_value: IAO:0000233 "https://github.com/FAIRsharing/subject-ontology/issues/79" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18470
name: Computational Chemistry
def: "Computational chemistry is the branch of theoretical chemistry whose major goals are to create efficient computer programs that calculate the properties of molecules (such as total energy, dipole moment, vibrational frequencies) and to apply these programs to concrete chemical objects. (from Information Headquarters)" []
comment: AL: 10.4.2019 Refactored the Physical and Theoretical Chemistry hierarchies to reconcile them using non-composite terms according to FAIRsharing curation best practises.
is_a: SRAO:0000173 ! Theoretical Chemistry
is_a: topic:3316 ! Computer Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18478
name: Nanotechnology
def: "A multidisciplinary field that strives to comprehend the interactions of cellular components, molecular components and engineered materials at the nanoscale (i.e., less than 100 nanometers). This discipline focuses on the understanding and control of matter at the nanoscale, wherein unique phenomena enable novel applications." []
comment: AL 9.10.23: Remove Chemistry as direct parent of Nanotechnology as it is already an indirect parent via Surface Science -> Physical Chemistry -> Chemistry. See also https://github.com/FAIRsharing/subject-ontology/issues/81
comment: AL 9.7.2019: Moved from DRAO to SRAO, as it is a subject area rather than a domain. At the same time, it was refactored from http://purl.obolibrary.org/obo/OMIT_0022673 to http://purl.obolibrary.org/obo/NCIT_C18478 for the curation provided by NCIT.
is_a: SRAO:0000236 ! Materials Science
is_a: SRAO:0000298 ! Surface Science
is_a: topic:3316 ! Computer Science
is_a: topic:3318 ! Physics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Nanoscale Science" xsd:string
property_value: IAO:0000233 "https://github.com/FAIRsharing/subject-ontology/issues/81" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18633
name: Animal Genetics
def: "The study of genetic traits in animals." []
comment: AL 17.11.21: Removed re3data alternative term "Animal Genetics, Cell and Developmental Biology"
comment: AL 25.1 18: The label within NCIT has been chosen as the label for this class as it is simpler, while the re3data has been retained as an alternative term.
is_a: NCIT:C16624 ! Genetics
is_a: NCIT:C17269 ! Zoology
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18645
name: Enzymology
def: "The branch of biochemistry dealing with the chemical nature and biological activity of enzymes." []
is_a: topic:3292 ! Biochemistry
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18701
name: Clinical Immunology
def: "The medical field that deals with immune diseases, including autoimmune diseases, allergies, rejection of organ transplants and immune deficiency." []
comment: AL 10.10.23: It doesn't make sense to keep Health Science as a parent when it is already an indirect parent via Immunology -> Health Science. See also https://github.com/FAIRsharing/subject-ontology/issues/82
comment: AL: 7.5.2019 Refactored re3data composite class 'Rheumatology, Clinical Immunology, Allergology' into classes 'Rheumatology' (remains child of Medicine) and 'Clinical Immunology' (child of Immunology and Health Sciences) according to FAIRsharing curation best practises.
is_a: NCIT:C18011 ! Immunology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000233 "https://github.com/FAIRsharing/subject-ontology/issues/82" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18729
name: Database Management
def: "Database management involves the design and maintenance of electronic data storage systems to facilitate and optimize the categorization, selection, and retrieval of information." []
comment: AL 12.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: topic:3071 ! Data Management
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C18740
name: Developmental Psychology
def: "The study of the psychological and behavioral changes that occur in an organism between birth and old age." []
comment: AL: 9.4.2019 Refactored re3data composite class 'Developmental and Educational Psychology' into sibling classes 'Developmental Psychology' and 'Educational Psychology' according to FAIRsharing curation best practises.
is_a: NCIT:C16501 ! Developmental Biology
is_a: NCIT:C17027 ! Psychology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18873
name: Microbial Physiology
def: "The metabolism of microbial life forms." []
comment: AL: 10.4.2019 Refactored re3data composite class 'Metabolism, Biochemistry and Genetics of Microorganisms' into sibling classes 'Microbial Genetics', ' Microbial Physiology' and 'Molecular Microbiology' according to FAIRsharing curation best practises.
is_a: NCIT:C16851 ! Microbiology
is_a: topic:3300 ! Physiology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000118 "Microbial Metabolism" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18874
name: Medical Microbiology
def: "The study of microorganisms with an emphasis on their role in the human disease process." []
comment: AL: 10.4.2019 Refactored re3data composite class 'Medical Microbiology, Molecular Infection Biology' into sibling classes 'Molecular Infection Biology' and 'Medical Microbiology' according to FAIRsharing curation best practises. Added an additional parent term of 'Biomedical Science' to align with the definition.
is_a: NCIT:C15188 ! Biomedical Science
is_a: NCIT:C16851 ! Microbiology
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C18948
name: Polymer Chemistry
def: "The study of synthesis and application of polymers. Polymers are any of numerous natural and synthetic compounds of usually high molecular weight consisting of up to millions of repeated linked units, each a relatively light and simple molecule." []
comment: AL: 21.5.2019 Refactored re3data composite class 'Preparatory and Physical Chemistry of Polymers' into 'Polymer Chemistry' according to FAIRsharing curation best practises.
is_a: NCIT:C16419 ! Organic Chemistry
is_a: SRAO:0000178 ! Polymer Research
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C19199
name: Health Science
def: "The sciences concerned with health promotion and maintenance." []
comment: AL 5.6.2019: The label was modified from plural to singular according to FAIRsharing best practises.
is_a: c:4318 ! Life Science
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C19349
name: Electrical Engineering
def: "The application of engineering and mathematical principles to electrical problems" []
is_a: NCIT:C16548 ! Engineering Science
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C19638
name: Mechanics
def: "Its fundamental principle is that any physical system can be decomposed into a collection of simple independent local elements each of which interacts only with its immediate neighbors. In classical mechanics a complete description of any physical system is supposed to be specified by giving the values of the various fields (e.g., the electric field, the magnetic field, etc.) at each of the relevant spacetime points." []
is_a: c:4682 ! Mechanical Engineering
is_a: topic:3318 ! Physics
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C20085
name: Proteomics
def: "The global analysis of cellular proteins. Proteomics uses a combination of sophisticated techniques including two-dimensional (2D) gel electrophoresis, image analysis, mass spectrometry, amino acid sequencing, and bio-informatics to resolve comprehensively, to quantify, and to characterize proteins. The application of proteomics provides major opportunities to elucidate disease mechanisms and to identify new diagnostic markers and therapeutic targets." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: NCIT:C17964 ! Bioinformatics
is_a: topic:3391 ! Omics
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C20126
name: Structural Genomics
def: "The combination of computational DNA sequence analysis with structural determinations by X-ray crystallography and NMR techniques to study protein structural families. (from RFA: GM-99-009)" []
comment: AL 17.11.21: Refactored from EDAM http://edamontology.org/topic_0122 because definition was insufficient (The elucidation of the three dimensional structure for all (available) proteins in a given organism.).
is_a: NCIT:C17964 ! Bioinformatics
is_a: NCIT:C18111 ! Structural Biology
is_a: NCIT:C84343 ! Genomics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C20179
name: Toxicogenomics
def: "Toxicogenomics is a new scientific field that elucidates how the entire genome is involved in biological responses of organisms exposed to environmental toxicants/stressors. Toxicogenomics combines information from studies of genomic-scale mRNA profiling (by microarray analysis), cell-wide or tissue-wide protein profiling (proteomics), genetic susceptibility, and computational models to understand the roles of gene-environment interactions in disease. (from National Center for Toxicogenomics homepage)" []
comment: AL 20.12.17: Although NCIT places Toxicogenomics as a child of Bioinformatics, FAIRsharing instead places it as a child of both Genomics and Toxicology.
is_a: NCIT:C17206 ! Toxicology
is_a: NCIT:C17964 ! Bioinformatics
is_a: NCIT:C84343 ! Genomics
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C20609
name: Synthesis Chemistry
def: "A specialized branch of chemistry dealing with the making of compounds, generally from the building blocks to the larger or complex molecules. e.g. making protein from amino acids, or DNA from nucleotides." []
comment: AL: 10.4.2019 Refactored the Physical and Theoretical Chemistry hierarchies to reconcile them using non-composite terms according to FAIRsharing curation best practises. Simplified this class name from 'Solid State and Surface Chemistry, Material Synthesis' according to FAIRsharing curation best practises.
is_a: NCIT:C16421 ! Physical Chemistry
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C26633
name: Drug Metabolism
def: "A series of chemical modifications of a drug compound by enzymatic activity that make the substrate (drug) more water soluble to allow its clearance from the body. Drug metabolism occurs in two phases: Phase I (biotransformation) involves oxidation, hydroxylation reduction, and hydrolysis. Phase II (conjugation) involves synthesis and conjugation." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: SRAO:0000318 ! Medicines Research and Development
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C39794
name: Philosophy
def: "The field of study concerned with the rational investigation of questions about existence and knowledge and ethics." []
is_a: NCIT:C17141 ! Social Science
is_a: OMIT:0007951 ! Humanities
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C54625
name: History
def: "The aggregate of past events; the continuum of events occurring in succession leading from the past to the present; a record or narrative description of past events." []
is_a: OMIT:0007951 ! Humanities
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C84343
name: Genomics
def: "The study of comprehensive sets of genes via high throughput methods." []
comment: AL 11.6.2019: This class has been refactored from EDAM to NCIT to better align with FAIRsharing curation guidelines.
is_a: topic:3391 ! Omics
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C86055
name: Cardiology
def: "The branch of medicine dealing with the heart and its diseases." []
comment: AL: 20.5.2019 Refactored re3data composite class 'Cardiology, Angiology' into sibling classes 'Cardiology' and 'Angiology' according to FAIRsharing curation best practises.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string
[Term]
id: NCIT:C93254
name: Regenerative Medicine
def: "The branch of medicine that involves the laboratory growth of functional tissues and organs and their use to regenerate or replace tissues and organs in the body that are damaged by diseases or cannot be healed. Examples include the transplantation of in vitro developed tissues, cell therapies, and stimulation of regeneration by biological substances." []
comment: AL 17.7.2019: Imported from DRAO as more appropriate within SRAO.
is_a: OMIT:0009577 ! Medicine
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
[Term]
id: NCIT:C95096
name: Neuroscience
def: "A subject domain utilized for the submission of information encompassing and representing data, vocabulary or records related to the brain and nervous system." []
comment: AL: 17.10.17 Neuroscience is asserted as a child of Medicine by re3data and Neuro*biology* as a child of 'Biomedical Science' by EDAM. We have placed Neurobiology as a child of Neuroscience. The re3data label has been changed from Neurosciences to Neuroscience to align with FAIRsharing terminology.
is_a: NCIT:C15188 ! Biomedical Science
property_value: IAO:0000117 "Allyson Lister" xsd:string
property_value: IAO:0000412 "NCIT" xsd:string
property_value: IAO:0000412 "re3data" xsd:string