-
Notifications
You must be signed in to change notification settings - Fork 0
/
index.html
101 lines (100 loc) · 4.89 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
---
title: Datascriptor
layout: default
permalink: /
---
<div id="wrapper2">
<div id="welcome" class="container">
<div class="title">
<h2>From structured dataset to data article</h2>
<span class="byline">Leveraging our experience and links with the communities,
we are now designing an open-source web-based tool – part of an ecosystem of existing annotation
and authoring systems – to help researchers to use community standards to describe their
(meta)data at the source, and capitalize on their effort to accelerate the creation of a data article.
</span>
</div>
<img src="images/datascriptor-prospect.svg" style="border-radius: 20px;">
<div class="default-text" style="padding-top: 1em;">
Download our poster
<a href="https://drive.google.com/file/d/1MltOij4U0Xr6QLcyiKkjhu_zOBX1fnEa/view?usp=sharing">here</a>.
</div>
</div>
</div>
<div id="wrapper3">
<div id="portfolio-0" class="portfolio container">
<div class="column1">
<div class="box">
<span class="icon icon-wrench"></span>
<h3>Our motivation</h3>
<p>
Governments, funders and publishers expect greater Findability, Accessibility, Interoperability and
Reusability of the (meta)data that supports research findings, according to the widely accepted FAIR
Principles (<a href="//dx.doi.org/10.1038/sdata.2016.18">doi:10.1038/sdata.2016.18</a>), which we helped author.
The use of community-developed standards for identification and description of the (meta)data,
and the deposition in trusted repositories, underpin FAIRness and reproducible research.
</p>
</div>
</div>
<div class="column2">
<div class="box">
<span class="icon icon-trophy"></span>
<h3>Our foundational work</h3>
<p>
Since 2007, our group has helped many communities to tackle these requirements via our open-source
ISA Tools (<a href="http://isa-tools.org">isa-tools.org</a> ; <a href="https://www.isacommons.org">
isacommons.org</a>), enabling standards-compliant description, deposition and
publication- of a variety of experiment types. Since 2011 our group runs FAIRsharing
(<a href="https://fairsharing.org">fairsharing.org</a>),
guiding researchers, journals, publishers and other communities to discover,
select and use repositories and community-developed standards with confidence.
</p>
</div>
</div>
</div>
<!-
-->
</div>
<div id="wrapper3-5">
<div id="portfolio-1" class="portfolio container">
<div class="column1">
<div class="box">
<span class="icon icon-key"></span>
<h3>Create or import</h3>
<p>
The user will be guided to provide (semi)structured descriptions of the experimental design, and of the
post-processed data, to generate, respectively, the Methods and a set of statements to populate the
Results section of a manuscript.
Datascriptor will work: (i) as a stand-alone tool - for anyone to use - implementing generic metadata
models, such as W3C Data Catalog (DCAT) vocabulary; and (ii) as a component of the ISA Tools and the
InterMine data-warehouse - for their user communities - implementing the ISA metadata model.
</p>
</div>
</div>
<div class="column2">
<div class="box">
<span class="icon icon-lock"></span>
<h3>Write and publish</h3>
<p>
To output short sentences from the (semi)structured input, we will evaluate a mixed data-to-text approach
using template-based and neural-based (i.e. machine learning) methods.
To further enrich the content of the manuscript, Datascriptor will connect to existing authoring systems,
including Substance, Texture, Stenci.la and Manuscripts, and export the result in JATS format. Our plans
also include an export as a DAR file and in LaTeX format.
</p>
</div>
</div>
</div>
</div>
<div id="wrapper4">
<div id="collaborators" class="container">
<div class="title">
User advisory board and collaborators
</div>
<span class="default-text">
We collaborate formally with researchers, journal publishers, repositories and other service providers, via our
ISA Tools and FAIRsharing resources. Specifically, the Datascriptor User Advisory Board includes a core group of
existing collaborators: Thomas Lemberger (<b>EMBO Press</b>), Scott Edmunds (<b>GigaScience</b>), Holly Murray (
<b>F1000</b>), Varsha Khodiyar (<b>Springer Nature</b>). If you want to collaborate, please contact us.
</span>
</div>
</div>