Installing Nalu-Wind #1140

matheusseidel · 2023-02-13T18:19:53Z

Hello.

I'm trying to install and learn to use Nalu Wind by fallowing the step by step on the User Manual (https://nalu-wind.readthedocs.io/en/latest/source/user/build_spack.html). I'm using WSL - Ubunto subsystem on a Windows 11 computer.

I tried running spack info nalu-wind and it seemed to work. It shows the description, homepage, versions, variants and dependencies.

But when I try running spack install nalu-wind (step 6) the installation fails and I get Error: Installation request failed. Refer to reported errors for failing package(s)..

If I run spack compilers, I get the fallowing:

==> Available compilers
-- gcc ubuntu20.04-x86_64 ---------------------------------------
[email protected]  [email protected]

Am I missing any important compilers?

Here's the full output when I try to install Nalu-Wind by running spack install nalu-wind:

mbseidel@Matheus-Seidel:~$ spack install nalu-wind
==> Installing pkgconf-1.8.0-ilwltsivlvwxznyd2impma7c3vnhvmrm
==> No binary for pkgconf-1.8.0-ilwltsivlvwxznyd2impma7c3vnhvmrm found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ef/ef9c7e61822b7cb8356e6e9e1dca58d9556f3200d78acab35e4347e9d4c2bbaf.tar.xz
==> No patches needed for pkgconf
==> pkgconf: Executing phase: 'autoreconf'
==> pkgconf: Executing phase: 'configure'
==> pkgconf: Executing phase: 'build'
==> pkgconf: Executing phase: 'install'
==> pkgconf: Successfully installed pkgconf-1.8.0-ilwltsivlvwxznyd2impma7c3vnhvmrm
  Stage: 2.52s.  Autoreconf: 0.00s.  Configure: 6.79s.  Build: 5.11s.  Install: 0.37s.  Total: 15.03s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pkgconf-1.8.0-ilwltsivlvwxznyd2impma7c3vnhvmrm
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/ca-certificates-mozilla-2023-01-10-zpamquzubfnqcgctpo3qviwzfcpxbycr
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/berkeley-db-18.1.40-tmienxac7sb3gfjvxvcn5mn6v7s7egz5
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libiconv-1.17-eq2ehhuafgtx4n3dxujlw7ffhwn2b62f
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/zlib-1.2.13-tz7ly23hvx7rwxcgyaovjtj247u5zogn
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libsigsegv-2.13-xaqlsg2nwztkvju6ga3cvu7qbm2hi473
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/util-macros-1.19.3-xv7zr4gjt3cv7vobq7p7sbnqkznibkb2
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/xz-5.4.1-bjzblt6wma27tbkz3nmd2f5tzvviz7nl
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/zstd-1.5.2-2w2gq576g7g5cdoomfxuagmioakte3cv
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/boost-1.80.0-lbqxjsf7dhxmafpob5nadkx5pfv6u7u5
==> Installing ncurses-6.4-4ked4kyfcesm5expx6piyd2pa33mt6gk
==> No binary for ncurses-6.4-4ked4kyfcesm5expx6piyd2pa33mt6gk found: installing from source
==> Fetching https://ftpmirror.gnu.org/ncurses/ncurses-6.4.tar.gz
==> No patches needed for ncurses
==> ncurses: Executing phase: 'autoreconf'
==> ncurses: Executing phase: 'configure'
==> ncurses: Executing phase: 'build'
==> ncurses: Executing phase: 'install'
==> ncurses: Successfully installed ncurses-6.4-4ked4kyfcesm5expx6piyd2pa33mt6gk
  Stage: 8.42s.  Autoreconf: 0.00s.  Configure: 51.09s.  Build: 1m 54.61s.  Install: 21.10s.  Total: 3m 15.54s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/ncurses-6.4-4ked4kyfcesm5expx6piyd2pa33mt6gk
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/diffutils-3.8-57xvqchdud7mqffsz7swiru3j34wyaev
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pigz-2.7-icod5gmzdfzlgxmwm3vo6r4gafjjnbec
==> Installing libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp
==> No binary for libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/5d/5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c.tar.xz
==> Fetching https://mirror.spack.io/_source-cache/archive/96/96151685cec997e1f9f3387e3626d61e6284d4d6e66e0e440c209286c03e9cc7.tar.gz
==> Moving resource stage
        source: /tmp/mbseidel/spack-stage/resource-xmlts-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp/spack-src/
        destination: /tmp/mbseidel/spack-stage/spack-stage-libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp/spack-src/xmlconf
==> Ran patch() for libxml2
==> libxml2: Executing phase: 'autoreconf'
==> libxml2: Executing phase: 'configure'
==> libxml2: Executing phase: 'build'
==> libxml2: Executing phase: 'install'
==> libxml2: Successfully installed libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp
  Stage: 10.00s.  Autoreconf: 0.00s.  Configure: 17.30s.  Build: 21.67s.  Install: 1.04s.  Total: 50.32s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp
==> Installing libedit-3.1-20210216-lj5hidnch3m7pwoyxaeaiwacyzgaprcx
==> No binary for libedit-3.1-20210216-lj5hidnch3m7pwoyxaeaiwacyzgaprcx found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/22/2283f741d2aab935c8c52c04b57bf952d02c2c02e651172f8ac811f77b1fc77a.tar.gz
==> No patches needed for libedit
==> libedit: Executing phase: 'autoreconf'
==> libedit: Executing phase: 'configure'
==> libedit: Executing phase: 'build'
==> libedit: Executing phase: 'install'
==> libedit: Successfully installed libedit-3.1-20210216-lj5hidnch3m7pwoyxaeaiwacyzgaprcx
  Stage: 1.93s.  Autoreconf: 0.00s.  Configure: 19.20s.  Build: 10.23s.  Install: 0.75s.  Total: 32.42s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libedit-3.1-20210216-lj5hidnch3m7pwoyxaeaiwacyzgaprcx
==> Installing readline-8.2-obvff3543tr6cppirxdjscb5dnwav565
==> No binary for readline-8.2-obvff3543tr6cppirxdjscb5dnwav565 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/3f/3feb7171f16a84ee82ca18a36d7b9be109a52c04f492a053331d7d1095007c35.tar.gz
==> Fetching https://mirror.spack.io/_source-cache/archive/bb/bbf97f1ec40a929edab5aa81998c1e2ef435436c597754916e6a5868f273aff7
==> Applied patch https://ftpmirror.gnu.org/readline/readline-8.2-patches/readline82-001
==> Ran patch() for readline
==> readline: Executing phase: 'autoreconf'
==> readline: Executing phase: 'configure'
==> readline: Executing phase: 'build'
==> readline: Executing phase: 'install'
==> readline: Successfully installed readline-8.2-obvff3543tr6cppirxdjscb5dnwav565
  Stage: 4.57s.  Autoreconf: 0.00s.  Configure: 12.92s.  Build: 5.51s.  Install: 0.57s.  Total: 23.89s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/readline-8.2-obvff3543tr6cppirxdjscb5dnwav565
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/m4-1.4.19-ylw2xqy6icd7l5eya5tlxbcsv66wplrv
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/bzip2-1.0.8-cigludapjjx76b6syp6dbhiyr32ni23i
==> Installing gdbm-1.23-bfpvk2os677iytsenls6bdtezbp4jylk
==> No binary for gdbm-1.23-bfpvk2os677iytsenls6bdtezbp4jylk found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/74/74b1081d21fff13ae4bd7c16e5d6e504a4c26f7cde1dca0d963a484174bbcacd.tar.gz
==> No patches needed for gdbm
==> gdbm: Executing phase: 'autoreconf'
==> gdbm: Executing phase: 'configure'
==> gdbm: Executing phase: 'build'
==> gdbm: Executing phase: 'install'
==> gdbm: Successfully installed gdbm-1.23-bfpvk2os677iytsenls6bdtezbp4jylk
  Stage: 1.55s.  Autoreconf: 0.00s.  Configure: 12.96s.  Build: 9.38s.  Install: 1.69s.  Total: 25.87s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/gdbm-1.23-bfpvk2os677iytsenls6bdtezbp4jylk
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libtool-2.4.7-e37octe3f3jlzh6nqgs35b2g5zmfygtr
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/tar-1.34-x6izrwuxxet6izavbetoav5qx6cazaou
==> Installing perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca
==> No binary for perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/e2/e26085af8ac396f62add8a533c3a0ea8c8497d836f0689347ac5abd7b7a4e00a.tar.gz
==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9da50e155df72bce55cb69f51f1dbb4b62d23740fb99f6178bb27f22ebdf8a46.tar.gz
==> Moving resource stage
        source: /tmp/mbseidel/spack-stage/resource-cpanm-fxrwq7zvqkte4ac2qmzprmpgd647mlca/spack-src/
        destination: /tmp/mbseidel/spack-stage/spack-stage-perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca/spack-src/cpanm/cpanm
==> Ran patch() for perl
==> perl: Executing phase: 'configure'
==> perl: Executing phase: 'build'
==> perl: Executing phase: 'install'
==> perl: Successfully installed perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca
  Stage: 7.34s.  Configure: 1m 47.46s.  Build: 1m 29.22s.  Install: 26.02s.  Total: 3m 50.29s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca
==> Installing libpciaccess-0.16-nry5hxmnfnyswtneeidpc55yihsasdfq
==> No binary for libpciaccess-0.16-nry5hxmnfnyswtneeidpc55yihsasdfq found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/84/84413553994aef0070cf420050aa5c0a51b1956b404920e21b81e96db6a61a27.tar.gz
==> No patches needed for libpciaccess
==> libpciaccess: Executing phase: 'autoreconf'
==> libpciaccess: Executing phase: 'configure'
==> libpciaccess: Executing phase: 'build'
==> libpciaccess: Executing phase: 'install'
==> libpciaccess: Successfully installed libpciaccess-0.16-nry5hxmnfnyswtneeidpc55yihsasdfq
  Stage: 1.94s.  Autoreconf: 0.00s.  Configure: 10.85s.  Build: 2.03s.  Install: 0.31s.  Total: 15.39s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libpciaccess-0.16-nry5hxmnfnyswtneeidpc55yihsasdfq
==> Installing gettext-0.21.1-ssysvqhhqj6giezskzxqqh5kwqittfyz
==> No binary for gettext-0.21.1-ssysvqhhqj6giezskzxqqh5kwqittfyz found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/50/50dbc8f39797950aa2c98e939947c527e5ac9ebd2c1b99dd7b06ba33a6767ae6.tar.xz
==> No patches needed for gettext
==> gettext: Executing phase: 'autoreconf'
==> gettext: Executing phase: 'configure'
==> gettext: Executing phase: 'build'
==> gettext: Executing phase: 'install'
==> gettext: Successfully installed gettext-0.21.1-ssysvqhhqj6giezskzxqqh5kwqittfyz
  Stage: 3.59s.  Autoreconf: 0.00s.  Configure: 3m 24.08s.  Build: 3m 40.95s.  Install: 55.32s.  Total: 8m 4.28s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/gettext-0.21.1-ssysvqhhqj6giezskzxqqh5kwqittfyz
==> Installing openssl-1.1.1s-per3xlsnc53w5xrw7kdvwpiaxqsbjcqj
==> No binary for openssl-1.1.1s-per3xlsnc53w5xrw7kdvwpiaxqsbjcqj found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/c5/c5ac01e760ee6ff0dab61d6b2bbd30146724d063eb322180c6f18a6f74e4b6aa.tar.gz
==> Ran patch() for openssl
==> openssl: Executing phase: 'install'
==> openssl: Successfully installed openssl-1.1.1s-per3xlsnc53w5xrw7kdvwpiaxqsbjcqj
  Stage: 4.33s.  Install: 1m 17.67s.  Total: 1m 22.11s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openssl-1.1.1s-per3xlsnc53w5xrw7kdvwpiaxqsbjcqj
==> Installing bison-3.8.2-3rcsduu3czscvhwpvexy2dd5oko36vsb
==> No binary for bison-3.8.2-3rcsduu3czscvhwpvexy2dd5oko36vsb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/06/06c9e13bdf7eb24d4ceb6b59205a4f67c2c7e7213119644430fe82fbd14a0abb.tar.gz
==> No patches needed for bison
==> bison: Executing phase: 'autoreconf'
==> bison: Executing phase: 'configure'
==> bison: Executing phase: 'build'
==> bison: Executing phase: 'install'
==> bison: Successfully installed bison-3.8.2-3rcsduu3czscvhwpvexy2dd5oko36vsb
  Stage: 3.12s.  Autoreconf: 0.00s.  Configure: 1m 10.47s.  Build: 10.01s.  Install: 3.56s.  Total: 1m 27.47s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/bison-3.8.2-3rcsduu3czscvhwpvexy2dd5oko36vsb
==> Installing openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap
==> No binary for openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/f3/f36ba3d7a60e7c8bcc54cd9aaa9b1223dd42eaf02c811791c37e8ca707c241ca.tar.gz
==> Fetching https://mirror.spack.io/_source-cache/archive/a4/a4c642fbaeafbf4178558368212594e99c74a7b6c2a119fd0627f7b54f1ebfb3
==> Fetching https://mirror.spack.io/_source-cache/archive/c2/c20f5188a9145395c37c22ae5c1f72bfc24edfbccbb636cc8f9227345615daa8
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/openblas/fix-cray-fortran-detection-pr3778.patch
==> Applied patch https://github.com/xianyi/OpenBLAS/commit/68277282df4adaafaf9b4a01c2eeb629eed99528.patch?full_index=1
==> Applied patch https://github.com/xianyi/OpenBLAS/commit/c957ad684ed6b8ca64f332221b376f2ad0fdc51a.patch?full_index=1
==> openblas: Executing phase: 'edit'
==> openblas: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8' 'CC=/home/mbseidel/spack/lib/spack/env/gcc/gcc' 'FC=/home/mbseidel/spack/lib/spack/env/gcc/gfortran' 'MAKE_NB_JOBS=0' 'ARCH=x86_64' 'TARGET=SKYLAKEX' 'USE_LOCKING=1' 'USE_OPENMP=0' 'USE_THREAD=0' 'RANLIB=ranlib' 'libs' 'netlib' 'shared'

5 errors found in build log:
  >> 4     cc1: error: bad value ('tigerlake') for '-march=' switch
     5     cc1: note: valid arguments to '-march=' switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybrid
           ge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client icelake-server cascadelake b
           onnell atom silvermont slm goldmont goldmont-plus tremont knl knm x86-64 eden-x2 nano nano-1000 nano-2000 nano-3000 nan
           o-x2 eden-x4 nano-x4 k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2
           bdver3 bdver4 znver1 znver2 btver1 btver2 native
  >> 6     cc1: error: bad value ('tigerlake') for '-march=' switch
     7     cc1: note: valid arguments to '-march=' switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybrid
           ge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client icelake-server cascadelake b
           onnell atom silvermont slm goldmont goldmont-plus tremont knl knm x86-64 eden-x2 nano nano-1000 nano-2000 nano-3000 nan
           o-x2 eden-x4 nano-x4 k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2
           bdver3 bdver4 znver1 znver2 btver1 btver2 native
  >> 8     make: *** [Makefile.prebuild:80: getarch] Error 1
  >> 9     Makefile.system:284: Makefile.conf: No such file or directory
  >> 10    make: *** No rule to make target 'Makefile.conf'.  Stop.

See build log for details:
  /tmp/mbseidel/spack-stage/spack-stage-openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap/spack-build-out.txt

==> Warning: Skipping build of trilinos-13.0.1-snd3eq3pd24ihj3z5a67fhqmmcmka52k since openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap failed
==> Warning: Skipping build of nalu-wind-master-lf4nret5qbkuoqdp65iojs6hcrveu2v2 since trilinos-13.0.1-snd3eq3pd24ihj3z5a67fhqmmcmka52k failed
==> Warning: Skipping build of hypre-2.27.0-gqfansqoeuwmgexfo43hhgjppknfxjdy since openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap failed
==> Installing autoconf-2.69-g5uvigzomxrhvxekl5zpgsddtaeq5zus
==> No binary for autoconf-2.69-g5uvigzomxrhvxekl5zpgsddtaeq5zus found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/95/954bd69b391edc12d6a4a51a2dd1476543da5c6bbf05a95b59dc0dd6fd4c2969.tar.gz
==> Fetching https://mirror.spack.io/_source-cache/archive/77/7793209b33013dc0f81208718c68440c5aae80e7a1c4b8d336e382525af791a7
==> Fetching https://mirror.spack.io/_source-cache/archive/35/35c449281546376449766f92d49fc121ca50e330e60fefcfc9be2af3253082c2
==> Fetching https://mirror.spack.io/_source-cache/archive/a4/a49dd5bac3b62daa0ff688ab4d508d71dbd2f4f8d7e2a02321926346161bf3ee
==> Applied patch http://mirrors.mit.edu/gentoo-portage/sys-devel/autoconf/files/autoconf-2.69-fix-libtool-test.patch
==> Applied patch http://mirrors.mit.edu/gentoo-portage/sys-devel/autoconf/files/autoconf-2.69-perl-5.26.patch
==> Applied patch http://mirrors.mit.edu/gentoo-portage/sys-devel/autoconf/files/autoconf-2.69-perl-5.26-2.patch
==> Ran patch() for autoconf
==> autoconf: Executing phase: 'autoreconf'
==> autoconf: Executing phase: 'configure'
==> autoconf: Executing phase: 'build'
==> autoconf: Executing phase: 'install'
==> autoconf: Successfully installed autoconf-2.69-g5uvigzomxrhvxekl5zpgsddtaeq5zus
  Stage: 3.69s.  Autoreconf: 0.00s.  Configure: 2.83s.  Build: 1.50s.  Install: 0.73s.  Total: 9.03s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/autoconf-2.69-g5uvigzomxrhvxekl5zpgsddtaeq5zus
==> Installing libxcrypt-4.4.33-gxsdb3cacizi2qiekc54n4h2rv5sqi7z
==> No binary for libxcrypt-4.4.33-gxsdb3cacizi2qiekc54n4h2rv5sqi7z found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e87acf9c652c573a4713d5582159f98f305d56ed5f754ce64f57d4194d6b3a6f.tar.xz
==> No patches needed for libxcrypt
==> libxcrypt: Executing phase: 'autoreconf'
==> libxcrypt: Executing phase: 'configure'
==> libxcrypt: Executing phase: 'build'
==> libxcrypt: Executing phase: 'install'
==> libxcrypt: Successfully installed libxcrypt-4.4.33-gxsdb3cacizi2qiekc54n4h2rv5sqi7z
  Stage: 1.87s.  Autoreconf: 0.00s.  Configure: 12.85s.  Build: 5.14s.  Install: 0.53s.  Total: 20.68s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libxcrypt-4.4.33-gxsdb3cacizi2qiekc54n4h2rv5sqi7z
==> Installing hwloc-2.9.0-smd555gog7zrcx5qda7b7t2mj6bce3ub
==> No binary for hwloc-2.9.0-smd555gog7zrcx5qda7b7t2mj6bce3ub found: installing from source
==> Fetching https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.0.tar.gz
==> No patches needed for hwloc
==> hwloc: Executing phase: 'autoreconf'
==> hwloc: Executing phase: 'configure'
==> hwloc: Executing phase: 'build'
==> hwloc: Executing phase: 'install'
==> hwloc: Successfully installed hwloc-2.9.0-smd555gog7zrcx5qda7b7t2mj6bce3ub
  Stage: 4.73s.  Autoreconf: 0.00s.  Configure: 37.14s.  Build: 18.86s.  Install: 3.35s.  Total: 1m 4.45s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/hwloc-2.9.0-smd555gog7zrcx5qda7b7t2mj6bce3ub
==> Installing libevent-2.1.12-lduiktlboewnqbuhj6vmdigxmcade4ey
==> No binary for libevent-2.1.12-lduiktlboewnqbuhj6vmdigxmcade4ey found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/92/92e6de1be9ec176428fd2367677e61ceffc2ee1cb119035037a27d346b0403bb.tar.gz
==> Ran patch() for libevent
==> libevent: Executing phase: 'autoreconf'
==> libevent: Executing phase: 'configure'
==> libevent: Executing phase: 'build'
==> libevent: Executing phase: 'install'
==> libevent: Successfully installed libevent-2.1.12-lduiktlboewnqbuhj6vmdigxmcade4ey
  Stage: 2.10s.  Autoreconf: 0.00s.  Configure: 32.99s.  Build: 30.08s.  Install: 1.60s.  Total: 1m 7.15s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libevent-2.1.12-lduiktlboewnqbuhj6vmdigxmcade4ey
==> Installing cmake-3.25.2-ftkpafzaalbq6xaflhga6rzizwhfbqw7
==> No binary for cmake-3.25.2-ftkpafzaalbq6xaflhga6rzizwhfbqw7 found: installing from source
==> Fetching https://github.com/Kitware/CMake/releases/download/v3.25.2/cmake-3.25.2.tar.gz
==> No patches needed for cmake
==> cmake: Executing phase: 'bootstrap'
==> cmake: Executing phase: 'build'
==> cmake: Executing phase: 'install'
==> cmake: Successfully installed cmake-3.25.2-ftkpafzaalbq6xaflhga6rzizwhfbqw7
  Stage: 11.07s.  Bootstrap: 3m 54.82s.  Build: 6m 0.32s.  Install: 12.33s.  Total: 10m 18.79s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/cmake-3.25.2-ftkpafzaalbq6xaflhga6rzizwhfbqw7
==> Installing krb5-1.20.1-bijopp4ooaoilwmu3mj6avvjkts7t5ro
==> No binary for krb5-1.20.1-bijopp4ooaoilwmu3mj6avvjkts7t5ro found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/70/704aed49b19eb5a7178b34b2873620ec299db08752d6a8574f95d41879ab8851.tar.gz
==> Ran patch() for krb5
==> krb5: Executing phase: 'autoreconf'
==> krb5: Executing phase: 'configure'
==> krb5: Executing phase: 'build'
==> krb5: Executing phase: 'install'
==> krb5: Successfully installed krb5-1.20.1-bijopp4ooaoilwmu3mj6avvjkts7t5ro
  Stage: 5.37s.  Autoreconf: 0.00s.  Configure: 58.12s.  Build: 1m 35.82s.  Install: 4.16s.  Total: 2m 43.89s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/krb5-1.20.1-bijopp4ooaoilwmu3mj6avvjkts7t5ro
==> Installing automake-1.16.5-g2n7gpqer5kbzllm4itnkurv5utqtuf2
==> No binary for automake-1.16.5-g2n7gpqer5kbzllm4itnkurv5utqtuf2 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/07/07bd24ad08a64bc17250ce09ec56e921d6343903943e99ccf63bbf0705e34605.tar.gz
==> Ran patch() for automake
==> automake: Executing phase: 'autoreconf'
==> automake: Executing phase: 'configure'
==> automake: Executing phase: 'build'
==> automake: Executing phase: 'install'
==> automake: Successfully installed automake-1.16.5-g2n7gpqer5kbzllm4itnkurv5utqtuf2
  Stage: 2.81s.  Autoreconf: 0.00s.  Configure: 4.49s.  Build: 1.04s.  Install: 0.48s.  Total: 9.10s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/automake-1.16.5-g2n7gpqer5kbzllm4itnkurv5utqtuf2
==> Installing pmix-4.1.2-3jdjlovpkr5o3gc2qwbksuiykpnwz62y
==> No binary for pmix-4.1.2-3jdjlovpkr5o3gc2qwbksuiykpnwz62y found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/67/670d3a02b39fb2126fe8084174cf03c484e027b5921b5c98a851108134e2597a.tar.bz2
==> No patches needed for pmix
==> pmix: Executing phase: 'autoreconf'
==> pmix: Executing phase: 'configure'
==> pmix: Executing phase: 'build'
==> pmix: Executing phase: 'install'
==> pmix: Successfully installed pmix-4.1.2-3jdjlovpkr5o3gc2qwbksuiykpnwz62y
  Stage: 1.47s.  Autoreconf: 0.00s.  Configure: 1m 19.29s.  Build: 2m 12.71s.  Install: 5.40s.  Total: 3m 39.22s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pmix-4.1.2-3jdjlovpkr5o3gc2qwbksuiykpnwz62y
==> Installing metis-5.1.0-dajaixq7jawsvxfyjry6wbd7f5xpporo
==> No binary for metis-5.1.0-dajaixq7jawsvxfyjry6wbd7f5xpporo found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/76/76faebe03f6c963127dbb73c13eab58c9a3faeae48779f049066a21c087c5db2.tar.gz
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/metis/gklib_path.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/metis/gklib_nomisleadingindentation_warning.patch
==> Ran patch() for metis
==> metis: Executing phase: 'cmake'
==> metis: Executing phase: 'build'
==> metis: Executing phase: 'install'
==> metis: Successfully installed metis-5.1.0-dajaixq7jawsvxfyjry6wbd7f5xpporo
  Stage: 2.64s.  Cmake: 1.79s.  Build: 5.66s.  Install: 0.60s.  Total: 10.91s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/metis-5.1.0-dajaixq7jawsvxfyjry6wbd7f5xpporo
==> Installing yaml-cpp-0.7.0-cisvyts2yrcwsocuhy2hym4ulghohv3o
==> No binary for yaml-cpp-0.7.0-cisvyts2yrcwsocuhy2hym4ulghohv3o found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/43/43e6a9fcb146ad871515f0d0873947e5d497a1c9c60c58cb102a97b47208b7c3.tar.gz
==> No patches needed for yaml-cpp
==> yaml-cpp: Executing phase: 'cmake'
==> yaml-cpp: Executing phase: 'build'
==> yaml-cpp: Executing phase: 'install'
==> yaml-cpp: Successfully installed yaml-cpp-0.7.0-cisvyts2yrcwsocuhy2hym4ulghohv3o
  Stage: 2.70s.  Cmake: 0.73s.  Build: 9.07s.  Install: 0.52s.  Total: 13.25s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/yaml-cpp-0.7.0-cisvyts2yrcwsocuhy2hym4ulghohv3o
==> Installing openssh-9.1p1-fp4spn2i4g4dww3yoyn6f2jgyavnm7eb
==> No binary for openssh-9.1p1-fp4spn2i4g4dww3yoyn6f2jgyavnm7eb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/19/19f85009c7e3e23787f0236fbb1578392ab4d4bf9f8ec5fe6bc1cd7e8bfdd288.tar.gz
==> Ran patch() for openssh
==> openssh: Executing phase: 'autoreconf'
==> openssh: Executing phase: 'configure'
==> openssh: Executing phase: 'build'
==> openssh: Executing phase: 'install'
==> openssh: Successfully installed openssh-9.1p1-fp4spn2i4g4dww3yoyn6f2jgyavnm7eb
  Stage: 2.92s.  Autoreconf: 0.00s.  Configure: 1m 21.80s.  Build: 26.60s.  Install: 0.99s.  Total: 1m 52.72s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openssh-9.1p1-fp4spn2i4g4dww3yoyn6f2jgyavnm7eb
==> Installing numactl-2.0.14-fobom5u3jle5g25i6z2lc5ox5kk32hfl
==> No binary for numactl-2.0.14-fobom5u3jle5g25i6z2lc5ox5kk32hfl found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/1e/1ee27abd07ff6ba140aaf9bc6379b37825e54496e01d6f7343330cf1a4487035.tar.gz
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/numactl/numactl-2.0.14-symver.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/numactl/fix-empty-block.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/numactl/link-with-latomic-if-needed.patch
==> numactl: Executing phase: 'autoreconf'
==> numactl: Executing phase: 'configure'
==> numactl: Executing phase: 'build'
==> numactl: Executing phase: 'install'
==> numactl: Successfully installed numactl-2.0.14-fobom5u3jle5g25i6z2lc5ox5kk32hfl
  Stage: 1.51s.  Autoreconf: 5.13s.  Configure: 7.17s.  Build: 2.51s.  Install: 0.98s.  Total: 17.63s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/numactl-2.0.14-fobom5u3jle5g25i6z2lc5ox5kk32hfl
==> Installing openmpi-4.1.4-awhey4bfjwmx5e7xx45pnvbiueczezjg
==> No binary for openmpi-4.1.4-awhey4bfjwmx5e7xx45pnvbiueczezjg found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/92/92912e175fd1234368c8730c03f4996fe5942e7479bb1d10059405e7f2b3930d.tar.bz2
==> No patches needed for openmpi
==> openmpi: Executing phase: 'autoreconf'
==> openmpi: Executing phase: 'configure'
==> openmpi: Executing phase: 'build'
==> openmpi: Executing phase: 'install'
==> openmpi: Successfully installed openmpi-4.1.4-awhey4bfjwmx5e7xx45pnvbiueczezjg
  Stage: 6.49s.  Autoreconf: 0.00s.  Configure: 7m 36.82s.  Build: 15m 53.42s.  Install: 48.76s.  Total: 24m 26.42s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openmpi-4.1.4-awhey4bfjwmx5e7xx45pnvbiueczezjg
==> Installing parallel-netcdf-1.12.3-xdg2cxtrzho3rv6s7kbqp6estpppp7ud
==> No binary for parallel-netcdf-1.12.3-xdg2cxtrzho3rv6s7kbqp6estpppp7ud found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/43/439e359d09bb93d0e58a6e3f928f39c2eae965b6c97f64e67cd42220d6034f77.tar.gz
==> No patches needed for parallel-netcdf
==> parallel-netcdf: Executing phase: 'autoreconf'
==> parallel-netcdf: Executing phase: 'configure'
==> parallel-netcdf: Executing phase: 'build'
==> parallel-netcdf: Executing phase: 'install'
==> parallel-netcdf: Successfully installed parallel-netcdf-1.12.3-xdg2cxtrzho3rv6s7kbqp6estpppp7ud
  Stage: 2.52s.  Autoreconf: 0.00s.  Configure: 50.89s.  Build: 1m 28.61s.  Install: 3.53s.  Total: 2m 26.40s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/parallel-netcdf-1.12.3-xdg2cxtrzho3rv6s7kbqp6estpppp7ud
==> Installing parmetis-4.0.3-hobpufruz66gmu3lral74w7ldur4y4kb
==> No binary for parmetis-4.0.3-hobpufruz66gmu3lral74w7ldur4y4kb found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/f2/f2d9a231b7cf97f1fee6e8c9663113ebf6c240d407d3c118c55b3633d6be6e5f.tar.gz
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/parmetis/pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/parmetis/pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch
==> parmetis: Executing phase: 'cmake'
==> parmetis: Executing phase: 'build'
==> parmetis: Executing phase: 'install'
==> parmetis: Successfully installed parmetis-4.0.3-hobpufruz66gmu3lral74w7ldur4y4kb
  Stage: 3.74s.  Cmake: 1.29s.  Build: 7.04s.  Install: 0.50s.  Total: 13.22s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/parmetis-4.0.3-hobpufruz66gmu3lral74w7ldur4y4kb
==> Installing hdf5-1.14.0-cfiyhmnpnpo6cg6jptahpzy64i2astcv
==> No binary for hdf5-1.14.0-cfiyhmnpnpo6cg6jptahpzy64i2astcv found: installing from source
==> Fetching https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.14/hdf5-1.14.0/src/hdf5-1.14.0.tar.gz
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/hdf5/hdf5_1_14_0_config_find_mpi.patch
==> Ran patch() for hdf5
==> hdf5: Executing phase: 'cmake'
==> hdf5: Executing phase: 'build'
==> hdf5: Executing phase: 'install'
==> hdf5: Successfully installed hdf5-1.14.0-cfiyhmnpnpo6cg6jptahpzy64i2astcv
  Stage: 55.62s.  Cmake: 49.98s.  Build: 5m 40.26s.  Install: 7.74s.  Total: 7m 34.79s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/hdf5-1.14.0-cfiyhmnpnpo6cg6jptahpzy64i2astcv
==> Installing matio-1.5.17-tgisdoddvo7w2am3d332f7qk57g3ofi3
==> No binary for matio-1.5.17-tgisdoddvo7w2am3d332f7qk57g3ofi3 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/5e/5e455527d370ab297c4abe5a2ab4d599c93ac7c1a0c85d841cc5c22f8221c400.tar.gz
==> Ran patch() for matio
==> matio: Executing phase: 'autoreconf'
==> matio: Executing phase: 'configure'
==> matio: Executing phase: 'build'
==> matio: Executing phase: 'install'
==> matio: Successfully installed matio-1.5.17-tgisdoddvo7w2am3d332f7qk57g3ofi3
  Stage: 3.66s.  Autoreconf: 0.00s.  Configure: 20.86s.  Build: 40.25s.  Install: 0.79s.  Total: 1m 6.43s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/matio-1.5.17-tgisdoddvo7w2am3d332f7qk57g3ofi3
==> Installing netcdf-c-4.9.0-calgmdkjl6rvcuq2haltgjyjvxmosa4j
==> No binary for netcdf-c-4.9.0-calgmdkjl6rvcuq2haltgjyjvxmosa4j found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9f4cb864f3ab54adb75409984c6202323d2fc66c003e5308f3cdf224ed41c0a6.tar.gz
==> No patches needed for netcdf-c
==> netcdf-c: Executing phase: 'autoreconf'
==> netcdf-c: Executing phase: 'configure'
==> netcdf-c: Executing phase: 'build'
==> netcdf-c: Executing phase: 'install'
==> netcdf-c: Successfully installed netcdf-c-4.9.0-calgmdkjl6rvcuq2haltgjyjvxmosa4j
  Stage: 3.02s.  Autoreconf: 0.00s.  Configure: 1m 14.01s.  Build: 1m 31.89s.  Install: 4.48s.  Total: 2m 54.87s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/netcdf-c-4.9.0-calgmdkjl6rvcuq2haltgjyjvxmosa4j
==> Installing cgns-4.3.0-ml5zbbpe327wi5mwxo5x2vfwtaz4hkjy
==> No binary for cgns-4.3.0-ml5zbbpe327wi5mwxo5x2vfwtaz4hkjy found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/77/7709eb7d99731dea0dd1eff183f109eaef8d9556624e3fbc34dc5177afc0a032.tar.gz
==> No patches needed for cgns
==> cgns: Executing phase: 'cmake'
==> cgns: Executing phase: 'build'
==> cgns: Executing phase: 'install'
==> cgns: Successfully installed cgns-4.3.0-ml5zbbpe327wi5mwxo5x2vfwtaz4hkjy
  Stage: 2.95s.  Cmake: 4.41s.  Build: 41.77s.  Install: 1.06s.  Total: 51.02s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/cgns-4.3.0-ml5zbbpe327wi5mwxo5x2vfwtaz4hkjy
==> Installing nccmp-1.9.0.1-jzxhkf5rn3upwoskdmwqbh5vhh5lshih
==> No binary for nccmp-1.9.0.1-jzxhkf5rn3upwoskdmwqbh5vhh5lshih found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/81/81e9753cf451afe8248d44c841e102349e07cde942b11d1f91b5f85feb622b99.tar.gz
==> No patches needed for nccmp
==> nccmp: Executing phase: 'cmake'
==> nccmp: Executing phase: 'build'
==> nccmp: Executing phase: 'install'
==> nccmp: Successfully installed nccmp-1.9.0.1-jzxhkf5rn3upwoskdmwqbh5vhh5lshih
  Stage: 2.56s.  Cmake: 16.22s.  Build: 2m 18.84s.  Install: 0.37s.  Total: 2m 38.92s
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/nccmp-1.9.0.1-jzxhkf5rn3upwoskdmwqbh5vhh5lshih
==> Error: nalu-wind-master-lf4nret5qbkuoqdp65iojs6hcrveu2v2: Package was not installed
==> Error: Installation request failed.  Refer to reported errors for failing package(s).
mbseidel@Matheus-Seidel:~$ spack install nalu-wind
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pkgconf-1.8.0-ilwltsivlvwxznyd2impma7c3vnhvmrm
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/ca-certificates-mozilla-2023-01-10-zpamquzubfnqcgctpo3qviwzfcpxbycr
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/berkeley-db-18.1.40-tmienxac7sb3gfjvxvcn5mn6v7s7egz5
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libiconv-1.17-eq2ehhuafgtx4n3dxujlw7ffhwn2b62f
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/zlib-1.2.13-tz7ly23hvx7rwxcgyaovjtj247u5zogn
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libsigsegv-2.13-xaqlsg2nwztkvju6ga3cvu7qbm2hi473
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/util-macros-1.19.3-xv7zr4gjt3cv7vobq7p7sbnqkznibkb2
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/xz-5.4.1-bjzblt6wma27tbkz3nmd2f5tzvviz7nl
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/zstd-1.5.2-2w2gq576g7g5cdoomfxuagmioakte3cv
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/boost-1.80.0-lbqxjsf7dhxmafpob5nadkx5pfv6u7u5
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/ncurses-6.4-4ked4kyfcesm5expx6piyd2pa33mt6gk
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/diffutils-3.8-57xvqchdud7mqffsz7swiru3j34wyaev
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pigz-2.7-icod5gmzdfzlgxmwm3vo6r4gafjjnbec
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libxml2-2.10.3-ks2vzgx2oxzsqldz24fac2ilrtx5ctxp
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/readline-8.2-obvff3543tr6cppirxdjscb5dnwav565
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libedit-3.1-20210216-lj5hidnch3m7pwoyxaeaiwacyzgaprcx
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/bzip2-1.0.8-cigludapjjx76b6syp6dbhiyr32ni23i
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/m4-1.4.19-ylw2xqy6icd7l5eya5tlxbcsv66wplrv
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/gdbm-1.23-bfpvk2os677iytsenls6bdtezbp4jylk
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/tar-1.34-x6izrwuxxet6izavbetoav5qx6cazaou
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libtool-2.4.7-e37octe3f3jlzh6nqgs35b2g5zmfygtr
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/perl-5.36.0-fxrwq7zvqkte4ac2qmzprmpgd647mlca
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/gettext-0.21.1-ssysvqhhqj6giezskzxqqh5kwqittfyz
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libpciaccess-0.16-nry5hxmnfnyswtneeidpc55yihsasdfq
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/autoconf-2.69-g5uvigzomxrhvxekl5zpgsddtaeq5zus
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/bison-3.8.2-3rcsduu3czscvhwpvexy2dd5oko36vsb
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libxcrypt-4.4.33-gxsdb3cacizi2qiekc54n4h2rv5sqi7z
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openssl-1.1.1s-per3xlsnc53w5xrw7kdvwpiaxqsbjcqj
==> Installing openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap
==> No binary for openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap found: installing from source
==> Using cached archive: /home/mbseidel/spack/var/spack/cache/_source-cache/archive/f3/f36ba3d7a60e7c8bcc54cd9aaa9b1223dd42eaf02c811791c37e8ca707c241ca.tar.gz
==> Using cached archive: /home/mbseidel/spack/var/spack/cache/_source-cache/archive/a4/a4c642fbaeafbf4178558368212594e99c74a7b6c2a119fd0627f7b54f1ebfb3
==> Using cached archive: /home/mbseidel/spack/var/spack/cache/_source-cache/archive/c2/c20f5188a9145395c37c22ae5c1f72bfc24edfbccbb636cc8f9227345615daa8
==> Applied patch /home/mbseidel/spack/var/spack/repos/builtin/packages/openblas/fix-cray-fortran-detection-pr3778.patch
==> Applied patch https://github.com/xianyi/OpenBLAS/commit/68277282df4adaafaf9b4a01c2eeb629eed99528.patch?full_index=1
==> Applied patch https://github.com/xianyi/OpenBLAS/commit/c957ad684ed6b8ca64f332221b376f2ad0fdc51a.patch?full_index=1
==> openblas: Executing phase: 'edit'
==> openblas: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j8' 'CC=/home/mbseidel/spack/lib/spack/env/gcc/gcc' 'FC=/home/mbseidel/spack/lib/spack/env/gcc/gfortran' 'MAKE_NB_JOBS=0' 'ARCH=x86_64' 'TARGET=SKYLAKEX' 'USE_LOCKING=1' 'USE_OPENMP=0' 'USE_THREAD=0' 'RANLIB=ranlib' 'libs' 'netlib' 'shared'

5 errors found in build log:
  >> 4     cc1: error: bad value ('tigerlake') for '-march=' switch
     5     cc1: note: valid arguments to '-march=' switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybrid
           ge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client icelake-server cascadelake b
           onnell atom silvermont slm goldmont goldmont-plus tremont knl knm x86-64 eden-x2 nano nano-1000 nano-2000 nano-3000 nan
           o-x2 eden-x4 nano-x4 k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2
           bdver3 bdver4 znver1 znver2 btver1 btver2 native
  >> 6     cc1: error: bad value ('tigerlake') for '-march=' switch
     7     cc1: note: valid arguments to '-march=' switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybrid
           ge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client icelake-server cascadelake b
           onnell atom silvermont slm goldmont goldmont-plus tremont knl knm x86-64 eden-x2 nano nano-1000 nano-2000 nano-3000 nan
           o-x2 eden-x4 nano-x4 k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2
           bdver3 bdver4 znver1 znver2 btver1 btver2 native
  >> 8     make: *** [Makefile.prebuild:80: getarch] Error 1
  >> 9     Makefile.system:284: Makefile.conf: No such file or directory
  >> 10    make: *** No rule to make target 'Makefile.conf'.  Stop.

See build log for details:
  /tmp/mbseidel/spack-stage/spack-stage-openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap/spack-build-out.txt

==> Warning: Skipping build of hypre-2.27.0-gqfansqoeuwmgexfo43hhgjppknfxjdy since openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap failed
==> Warning: Skipping build of nalu-wind-master-lf4nret5qbkuoqdp65iojs6hcrveu2v2 since hypre-2.27.0-gqfansqoeuwmgexfo43hhgjppknfxjdy failed
==> Warning: Skipping build of trilinos-13.0.1-snd3eq3pd24ihj3z5a67fhqmmcmka52k since openblas-0.3.21-mtybermj6o2zfwa7gpzckmovnoipqlap failed
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/hwloc-2.9.0-smd555gog7zrcx5qda7b7t2mj6bce3ub
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/automake-1.16.5-g2n7gpqer5kbzllm4itnkurv5utqtuf2
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/libevent-2.1.12-lduiktlboewnqbuhj6vmdigxmcade4ey
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/cmake-3.25.2-ftkpafzaalbq6xaflhga6rzizwhfbqw7
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/krb5-1.20.1-bijopp4ooaoilwmu3mj6avvjkts7t5ro
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/numactl-2.0.14-fobom5u3jle5g25i6z2lc5ox5kk32hfl
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/pmix-4.1.2-3jdjlovpkr5o3gc2qwbksuiykpnwz62y
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/yaml-cpp-0.7.0-cisvyts2yrcwsocuhy2hym4ulghohv3o
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/metis-5.1.0-dajaixq7jawsvxfyjry6wbd7f5xpporo
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openssh-9.1p1-fp4spn2i4g4dww3yoyn6f2jgyavnm7eb
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/openmpi-4.1.4-awhey4bfjwmx5e7xx45pnvbiueczezjg
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/parmetis-4.0.3-hobpufruz66gmu3lral74w7ldur4y4kb
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/hdf5-1.14.0-cfiyhmnpnpo6cg6jptahpzy64i2astcv
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/parallel-netcdf-1.12.3-xdg2cxtrzho3rv6s7kbqp6estpppp7ud
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/matio-1.5.17-tgisdoddvo7w2am3d332f7qk57g3ofi3
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/cgns-4.3.0-ml5zbbpe327wi5mwxo5x2vfwtaz4hkjy
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/netcdf-c-4.9.0-calgmdkjl6rvcuq2haltgjyjvxmosa4j
[+] /home/mbseidel/spack/opt/spack/linux-ubuntu20.04-icelake/gcc-9.3.0/nccmp-1.9.0.1-jzxhkf5rn3upwoskdmwqbh5vhh5lshih
==> Error: nalu-wind-master-lf4nret5qbkuoqdp65iojs6hcrveu2v2: Package was not installed
==> Error: Installation request failed.  Refer to reported errors for failing package(s).

The text was updated successfully, but these errors were encountered:

psakievich · 2023-02-14T21:40:55Z

@matheusseidel I'm not sure. I don't have a windows machine to try and reproduce this. Its a failure in openblas so you still have a ways to go to get to nalu. You might want to consider asking around on spack's slack about this. Or if you are okay working in a container, we have a docker image we update daily on dockerhub: https://hub.docker.com/r/ecpe4s/exawind-snapshot

matheusseidel · 2023-02-15T00:29:05Z

@matheusseidel I'm not sure. I don't have a windows machine to try and reproduce this. Its a failure in openblas so you still have a ways to go to get to nalu. You might want to consider asking around on spack's slack about this. Or if you are okay working in a container, we have a docker image we update daily on dockerhub: https://hub.docker.com/r/ecpe4s/exawind-snapshot

I never used container, is there any user guide for start using Nalu-Wind on docker?
Or what would it be the other option to get to Nalu-Wind?

Thanks.

psakievich · 2023-02-15T17:24:15Z

@matheusseidel there is a little documentation here: https://nalu-wind.readthedocs.io/en/latest/source/user/build_spack.html#building-inside-docker-container

In terms of getting setup with docker, it is just downloading the software I believe. There are a lot of resources available to help with that.

For your build issues above I'm not sure the best way to advise you. You need to get the TPL's in place one way or another. Spack is the most convenient method, but we obviously can't support debugging build issues for all our TPL's. Build issues from spack can be raised through spack's slack channel and their github issues page.

matheusseidel · 2023-02-16T01:49:35Z

@matheusseidel there is a little documentation here: https://nalu-wind.readthedocs.io/en/latest/source/user/build_spack.html#building-inside-docker-container

In terms of getting setup with docker, it is just downloading the software I believe. There are a lot of resources available to help with that.

For your build issues above I'm not sure the best way to advise you. You need to get the TPL's in place one way or another. Spack is the most convenient method, but we obviously can't support debugging build issues for all our TPL's. Build issues from spack can be raised through spack's slack channel and their github issues page.

Ok. Thank you very much.

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Installing Nalu-Wind #1140

Installing Nalu-Wind #1140

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Installing Nalu-Wind #1140

Installing Nalu-Wind #1140

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matheusseidel commented Feb 13, 2023

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matheusseidel commented Feb 16, 2023