The program is not working for me

[Shoffi89]

I´m using anaconda .
This comes up when i start the program with "bash"
\ANDA_Test\ANDA-main>Bash anda.sh
anda.sh: line 28: unexpected EOF while looking for matching `)'
anda.sh: line 42: syntax error: unexpected end of file

[YlvaJohansson]

Hi,
I tried the same but it worked when I typed ANDA.sh instead.
However, now it doesn't work since the python script is asking for setting the n cores. And I can not find where to set that.
Anyone who knows?

Best

[hallvaaw]

If ANDA can't be run from the terminal you can try to run only "cell_metrics.py" in Fiji.

[Shoffi89]

If ANDA can't be run from the terminal you can try to run only "cell_metrics.py" in Fiji.
This is also not working for me.

When i start ist as Macro:
Traceback (most recent call last):
File "", line 5, in
IOError: (2, 'No such file or directory', 'anda_parameters.txt')

[hallvaaw]

"cell_metrics.py" has recently been updated and reads "pipeline_parameters.txt" instead of "anda_parameters.txt". You may download the newly updated file and manually create the "pipeline_parameters.txt" file in this format:

<full path to images>
<full path to Fiji>
neurites cells attachment
<cell line name>
save_outlines
neurites;cells;attachment;
0

[Shoffi89]

Thank you
I tested the Program on a virtual machine and it seems that this solved most of the issues i had.

"cell_metrics.py" has recently been updated and reads "pipeline_parameters.txt" instead of "anda_parameters.txt". You may download the newly updated file and manually create the "pipeline_parameters.txt" file in this format:

neurites cells attachment save_outlines neurites;cells;attachment; 0

[Shoffi89]

Hi ,
I came back to the programm and tried to run it under a ubuntu os.
i now get something out, but don´t now if this is correct.
Was expecting to get pictures which showed the outlines of cell bodys and neurite outlines and a .csv data with the coressponding data.

This is an example of my results my cells and neurites output

PC12 beispiel bilder_Image002_ch00.tif.csv

PC12 beispiel bilder_Image002_ch00.tif.csv

there is at least no error massage but im not sure if the data should look like this.

please contact me if you have any idea what issue might occure.

Greetings
Sven

[Pamelag25]

Hi.

I run ANDA in Windows, and I am getting the same output files (.csv), but no images of the tracing lines.

I am getting this error: [ERROR] Cannot create plugin: org.scijava.ui.swing.plot.io.PlotToSvgIOPlugin.

Do you know how can I solve the error?

Thanks,

Sincerely,
Pamela

[hallvaaw]

Your issue might be solved by using the newest version of Fiji.