From 87d86d6c69769aed4cdc19e211cce5f0f3e1bd96 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Oriol=20L=C3=B3pez-Doriga?= <orildsaga@gmail.com>
Date: Fri, 22 Sep 2023 12:13:44 +0200
Subject: [PATCH] modifying genomicVariations for g_variants in ontology filter
 scope

---
 beacon/db/filters.py | 15 ++++++++++++---
 1 file changed, 12 insertions(+), 3 deletions(-)

diff --git a/beacon/db/filters.py b/beacon/db/filters.py
index 354dc4e3..6387751c 100644
--- a/beacon/db/filters.py
+++ b/beacon/db/filters.py
@@ -93,7 +93,10 @@ def apply_ontology_filter(query: dict, filter: OntologyFilter, collection: str)
         query_filtering={}
         query_filtering['$and']=[]
         dict_scope={}
-        dict_scope['scope']=collection
+        if collection == 'g_variants':
+            dict_scope['scope']='genomicVariations'
+        else:
+            dict_scope['scope']=collection
         query_filtering['$and'].append(dict_scope)
         dict_id={}
         dict_id['id']=filter.id
@@ -163,7 +166,10 @@ def apply_ontology_filter(query: dict, filter: OntologyFilter, collection: str)
         query_filtering={}
         query_filtering['$and']=[]
         dict_scope={}
-        dict_scope['scope']=collection
+        if collection == 'g_variants':
+            dict_scope['scope']='genomicVariations'
+        else:
+            dict_scope['scope']=collection
         query_filtering['$and'].append(dict_scope)
         dict_id={}
         dict_id['id']=filter.id
@@ -208,7 +214,10 @@ def apply_ontology_filter(query: dict, filter: OntologyFilter, collection: str)
         query_filtering={}
         query_filtering['$and']=[]
         dict_scope={}
-        dict_scope['scope']=collection
+        if collection == 'g_variants':
+            dict_scope['scope']='genomicVariations'
+        else:
+            dict_scope['scope']=collection
         query_filtering['$and'].append(dict_scope)
         dict_id={}
         dict_id['id']=filter.id