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Merge pull request #2369 from EBISPOT/2347
Imported OBA term for #2347
2 parents 91d43fb + a1c68e7 commit f3933da

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‎efo-base.owl

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Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the
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License. </dc:rights>
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<terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
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<rdfs:comment>2025-03-28</rdfs:comment>
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<rdfs:comment>2025-04-01</rdfs:comment>
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<owl:versionInfo>3.76.1</owl:versionInfo>
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</owl:Ontology>
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@@ -254828,6 +254828,7 @@ http://humupd.oxfordjournals.org/content/13/2/103.full</rdfs:comment>
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<obo:IAO_0000115>A non-neoplastic or neoplastic disorder that affects the ovary. Representative examples of non-neoplastic disorders include endometriosis and polycystic ovarian disease. Representative examples of neoplastic disorders include ovarian surface epithelial-stromal tumors, germ cell tumors, and sex cord-stromal tumors.</obo:IAO_0000115>
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<obo:IAO_0000117>Catherine Leroy</obo:IAO_0000117>
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<obo:IAO_0000117>Helen Parkinson</obo:IAO_0000117>
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<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
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<oboInOwl:hasDbXref>DOID:1100</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>MEDGEN:892314</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>MESH:D010049</oboInOwl:hasDbXref>
@@ -521633,6 +521634,19 @@ Smart-seq3 is a continuation and improvement of the Smart-seq technology, specif
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<!-- http://www.ebi.ac.uk/efo/EFO_0022917 -->
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<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0022917">
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<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0003892"/>
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<obo:IAO_0000115>It is defined as forced expiratory volume in 1 s (FEV1) &lt;80% predicted and FEV1/forced vital capacity (FVC) ratio ≥0.70.</obo:IAO_0000115>
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<dc:creator>Zoe May Pendlington</dc:creator>
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<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-04-01T11:04:25Z</dc:date>
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<oboInOwl:hasExactSynonym>PRISm</oboInOwl:hasExactSynonym>
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<rdfs:label xml:lang="en">preserved ratio impaired spirometry</rdfs:label>
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</owl:Class>
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<!-- http://www.ebi.ac.uk/efo/EFO_0022918 -->
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<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0022918">
@@ -521694,6 +521708,19 @@ Smart-seq3 is a continuation and improvement of the Smart-seq technology, specif
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<!-- http://www.ebi.ac.uk/efo/EFO_0022923 -->
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<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0022923">
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<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0003919"/>
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<obo:IAO_0000115>Social factors such as personal behavior, lifestyle, or environment belonging to the subject which are known to increase the likelihood of infection and disease.</obo:IAO_0000115>
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<dc:creator>Zoe May Pendlington</dc:creator>
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<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-04-01T11:27:53Z</dc:date>
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<oboInOwl:hasDbXref>NCIT:C102711</oboInOwl:hasDbXref>
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<rdfs:label xml:lang="en">social risk factor</rdfs:label>
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</owl:Class>
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<!-- http://www.ebi.ac.uk/efo/EFO_0030000 -->
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<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0030000">
@@ -725311,6 +725338,7 @@ Use: http://purl.obolibrary.org/obo/MONDO_0006715</efo:reason_for_obsolescence>
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<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001491"/>
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<obo:IAO_0000115>Three or more consecutive spontaneous abortions.</obo:IAO_0000115>
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<obo:IAO_0000117>Dani Welter</obo:IAO_0000117>
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<efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
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<oboInOwl:hasDbXref>DOID:11946</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>ICD10:N96</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>MEDGEN:1259</oboInOwl:hasDbXref>

‎src/ontology/components/gwas_import.owl

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@@ -11225,6 +11225,7 @@ Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005763>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005767>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005768>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005769>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005771>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005772>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005773>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_0005774>))
@@ -19271,6 +19272,7 @@ Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000938>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000941>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000948>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000951>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000954>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000959>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000961>))
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Declaration(Class(<http://www.ebi.ac.uk/efo/EFO_1000965>))
@@ -64353,6 +64355,10 @@ AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_0005769> "true"^^xsd:boolean)
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# Class: <http://www.ebi.ac.uk/efo/EFO_0005771> (<http://www.ebi.ac.uk/efo/EFO_0005771>)
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_0005771> "true"^^xsd:boolean)
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# Class: <http://www.ebi.ac.uk/efo/EFO_0005772> (<http://www.ebi.ac.uk/efo/EFO_0005772>)
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_0005772> "true"^^xsd:boolean)
@@ -96537,6 +96543,10 @@ AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_1000951> "true"^^xsd:boolean)
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# Class: <http://www.ebi.ac.uk/efo/EFO_1000954> (<http://www.ebi.ac.uk/efo/EFO_1000954>)
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_1000954> "true"^^xsd:boolean)
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# Class: <http://www.ebi.ac.uk/efo/EFO_1000959> (<http://www.ebi.ac.uk/efo/EFO_1000959>)
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AnnotationAssertion(<http://www.ebi.ac.uk/efo/gwas_trait> <http://www.ebi.ac.uk/efo/EFO_1000959> "true"^^xsd:boolean)

‎src/ontology/imports/oba_import.owl

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<!-- http://purl.obolibrary.org/obo/OBA_2045560 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2045560">
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<owl:equivalentClass>
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<owl:Class>
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<owl:intersectionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000070"/>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
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<owl:someValuesFrom>
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<owl:Class>
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<owl:intersectionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_18248"/>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000955"/>
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</owl:Restriction>
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</owl:intersectionOf>
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</owl:Class>
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</owl:someValuesFrom>
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</owl:Restriction>
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</owl:intersectionOf>
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</owl:Class>
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</owl:equivalentClass>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBA_VT0001770"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBA_2045210"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
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<owl:someValuesFrom>
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<owl:Class>
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<owl:intersectionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_18248"/>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000955"/>
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</owl:Restriction>
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</owl:intersectionOf>
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</owl:Class>
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</owl:someValuesFrom>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002314"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001062"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>The amount of a iron atom when measured in brain.</obo:IAO_0000115>
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<terms:contributor>https://orcid.org/0000-0001-8314-2140</terms:contributor>
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<oboInOwl:hasDbXref>PMID:38789058</oboInOwl:hasDbXref>
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<oboInOwl:hasExactSynonym>brain iron amount</oboInOwl:hasExactSynonym>
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<oboInOwl:hasExactSynonym>brain iron atom amount</oboInOwl:hasExactSynonym>
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<rdfs:label>amount of iron in brain</rdfs:label>
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</owl:Class>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2045560"/>
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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
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<owl:annotatedTarget>The amount of a iron atom when measured in brain.</owl:annotatedTarget>
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<oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_2045560"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
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<owl:annotatedTarget>brain iron atom amount</owl:annotatedTarget>
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<oboInOwl:hasDbXref>AUTO:patterns/patterns/entity_attribute_location</oboInOwl:hasDbXref>
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</owl:Axiom>
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<!-- http://purl.obolibrary.org/obo/OBA_2050001 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050001">

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