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deeptools image requires root user #44

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johnbradley opened this issue Feb 12, 2018 · 1 comment
Open

deeptools image requires root user #44

johnbradley opened this issue Feb 12, 2018 · 1 comment

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@johnbradley
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I think this limitation is due to the base image: continuumio/miniconda
How to reproduce:

$ docker run --user nobody dukegcb/deeptools:2.2.4 multiBamSummary -h
...
IOError: [Errno 13] Permission denied: '/opt/conda/lib/python2.7/site-packages/
    deepTools-2.2.4-py2.7.egg-info/PKG-INFO'
johnbradley added a commit that referenced this issue Feb 12, 2018
@johnbradley
improve progress printing and skip deeptools tests
74888f5 
Created issue #44 to deal with fixing deeptools
@dleehr
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dleehr commented Feb 12, 2018

Yeah the qiime2 image had that same problem for the same reason. I think if the conda install runs as a non root user it worked

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@johnbradley @dleehr