Fix an issue with numpy 2. (#1140)

Author: manthey

.pre-commit-config.yaml

@@ -4,7 +4,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.6.0
+  rev: v5.0.0
   hooks:
   - id: check-added-large-files
   - id: check-ast
@@ -57,7 +57,7 @@ repos:
   hooks:
   - id: circleci-config-validate
 - repo: https://github.com/asottile/pyupgrade
-  rev: v3.17.0
+  rev: v3.18.0
   hooks:
     - id: pyupgrade
       args:
@@ -73,7 +73,7 @@ repos:
     - id: flake8
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.6.1
+  rev: v0.7.0
   hooks:
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]

histomicstk/features/compute_morphometry_features.py

@@ -213,7 +213,8 @@ def boxcount(arr, k):
     # Fit the successive log(sizes) with log (counts)
     coeffs = [0]
     with warnings.catch_warnings():
-        warnings.simplefilter('ignore', np.RankWarning)
+        if hasattr(np, 'RankWarning'):
+            warnings.simplefilter('ignore', np.RankWarning)
         if len(counts):
             try:
                 coeffs = np.polyfit(np.log(sizes), np.log(counts), 1)