ENH: Add scipy as dependency (#119)

Leengit · web-flow · commit 88907d079c02 · 2023-03-22T11:25:45.000-04:00
ENH: Bump version to 2.3.2
diff --git a/example/pytorch_stream.ipynb b/example/pytorch_stream.ipynb
@@ -19,7 +19,7 @@
    "source": [
     "## Installation\n",
     "\n",
-    "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands.  Note that image readers in addition to openslide are also supported by using, e.g., `large_image[openslide,ometiff,openjpeg,bioformats]` on the below pip install command line."
+    "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands.  Note that image readers in addition to openslide are also supported by using, e.g., `large_image[bioformats,ometiff,openjpeg,openslide,tiff]` on the below pip install command line."
    ]
   },
   {
diff --git a/example/tensorflow_stream.ipynb b/example/tensorflow_stream.ipynb
@@ -19,7 +19,7 @@
    "source": [
     "## Installation\n",
     "\n",
-    "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands.  Note that image readers in addition to openslide are also supported by using, e.g., `large_image[openslide,ometiff,openjpeg,bioformats]` on the below pip install command line."
+    "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands.  Note that image readers in addition to openslide are also supported by using, e.g., `large_image[bioformats,ometiff,openjpeg,openslide,tiff]` on the below pip install command line."
    ]
   },
   {
diff --git a/histomics_stream/__init__.py b/histomics_stream/__init__.py
@@ -18,7 +18,7 @@
 
 """Whole-slide image streamer for machine learning frameworks."""
 
-__version__ = "2.3.1"
+__version__ = "2.3.2"
 
 """
 
diff --git a/pyproject.toml b/pyproject.toml
@@ -13,7 +13,9 @@ classifiers = ["License :: OSI Approved :: Apache Software License"]
 dependencies = [
     "imagecodecs",
     "itk",
+    "numcodecs",
     "numpy<1.24",
+    "scipy",
     "tensorflow",
     "torch",
     "zarr",

Original file line number	Diff line number	Diff line change
`@@ -19,7 +19,7 @@`
`19`	`19`	`"source": [`
`20`	`20`	`"## Installation\n",`
`21`	`21`	`"\n",`
`22`		- "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands. Note that image readers in addition to openslide are also supported by using, e.g., `large_image[openslide,ometiff,openjpeg,bioformats]` on the below pip install command line."
	`22`	+ "If you are running this notebook on Google Colab or another system where `histomics_stream` and its dependencies are not yet installed then they can be installed with the following commands. Note that image readers in addition to openslide are also supported by using, e.g., `large_image[bioformats,ometiff,openjpeg,openslide,tiff]` on the below pip install command line."
`23`	`23`	`]`
`24`	`24`	`},`
`25`	`25`	`{`