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Is it possible to call STRs with graphtyper? #147

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scienception opened this issue Mar 20, 2024 · 1 comment
Open

Is it possible to call STRs with graphtyper? #147

scienception opened this issue Mar 20, 2024 · 1 comment

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@scienception
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What would be the arguments/parameters in such case?

Thank you!
@hannespetur
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Hey,

running graphtyper genotype normally should output STRs among other small variants. If you already have STRs in a VCF that you want to force call, you can do that with the --vcf option.

Best,
Hannes

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@hannespetur @scienception