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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(aveLogCPMWithOffset,DGEList)
S3method(aveLogCPMWithOffset,default)
S3method(cpmWithOffset,DGEList)
S3method(cpmWithOffset,default)
S3method(get.ggplots,default)
S3method(get.ggplots,gg)
S3method(get.ggplots,list)
export(add_bfdr)
export(add_numbered_colnames)
export(add_qvalue)
export(assign_into)
export(auto_factorize_columns)
export(aveLogCPMWithOffset)
export(bfdr)
export(cairo_pdf_onefile)
export(clamp_trans)
export(cleanup_mcols)
export(code_control_named)
export(collapse_to_atomic)
export(combineFCResults)
export(cpmWithOffset)
export(deparse_onestring)
export(discrete_gradient)
export(dot_mutate)
export(eBayes_auto_proportion)
export(ensure_atomic_columns)
export(estimateDispByGroup)
export(fac2char)
export(featureCountsParallel)
export(featureCountsQuiet)
export(first_accessible_path)
export(format_bp)
export(get.ggplots)
export(getBCVTable)
export(getNormLineData)
export(getOffsetNormCurveData)
export(get_mds)
export(get_pval_colname)
export(get_tx2gene_from_txdb)
export(get_txdb)
export(gff_to_grl)
export(ggduo_dataXY)
export(ggplotBCV)
export(ggplotly.printer)
export(ggprint)
export(grl_to_saf)
export(is_dev)
export(is_valueless)
export(liftOverLax)
export(liftOver_motifMap)
export(load_filtered)
export(load_in_new_env)
export(make_futures)
export(make_futures_)
export(match_arg)
export(mutate_if_present)
export(neglog_trans)
export(parse_bp)
export(plot_pval_hist)
export(power_trans)
export(print_var_vector)
export(promote_common_mcols)
export(quotemeta)
export(rasterpdf)
export(read_RDS_or_RDA)
export(read_additional_gene_info)
export(read_annotation_from_gff)
export(read_annotation_from_rdata)
export(read_annotation_from_saf)
export(read_idr_table)
export(read_motifmap)
export(read_narrowPeak)
export(read_regions)
export(read_saf)
export(read_single_object_from_rda)
export(read_table_general)
export(read_tx2gene_from_genemap)
export(readsToFragmentMidpoints)
export(relevel_columns)
export(save_RDS_or_RDA)
export(save_image_filtered)
export(selectModelParallel)
export(si2f)
export(sprintf_single_value)
export(strand_sign)
export(strip_design_factor_names)
export(subtractCoefs)
export(suppressPlot)
export(tsmsg)
export(voomWithDuplicateCorrelation)
export(voomWithOffset)
export(voomWithQualityWeightsAndOffset)
export(windowCountsParallel)
export(with_dev)
export(with_gc)
export(write_motifmap)
export(write_narrowPeak)
import(dplyr)
import(ggplot2)
import(magrittr)
import(stringr)
importFrom(assertthat,assert_that)
importFrom(glue,glue)
importFrom(grDevices,cairo_pdf)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.list)
importFrom(grDevices,dev.off)
importFrom(grDevices,dev.set)
importFrom(grDevices,png)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,title)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(rlang,as_list)
importFrom(rlang,as_quosure)
importFrom(rlang,enquos)
importFrom(rlang,eval_tidy)
importFrom(rlang,is_named)
importFrom(rlang,is_scalar_double)
importFrom(rlang,is_scalar_integer)
importFrom(rlang,quo)
importFrom(stats,approx)
importFrom(stats,approxfun)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,cmdscale)
importFrom(stats,end)
importFrom(stats,lowess)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,start)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.table)