gen_3col_files.sh

#!/usr/bin/env bash

maindir=`pwd`
baseout=${maindir}/fsl/EVfiles
if [ ! -d ${baseout} ]; then
  mkdir -p $baseout
fi

sub=$1
nruns=$2

for run in `seq $nruns`; do
  input=${maindir}/bids/sub-${sub}/func/sub-${sub}_task-trust_run-0${run}_events.tsv
  output=${baseout}/sub-${sub}/trust
  mkdir -p $output
  if [ -e $input ]; then
    bash BIDSto3col.sh $input ${output}/run-0${run}
  else
    echo "PATH ERROR: cannot locate ${input}."
    exit
  fi
done
for run in 1 2; do
  input=${maindir}/bids/sub-${sub}/func/sub-${sub}_task-sharedreward_run-0${run}_events.tsv
  output=${baseout}/sub-${sub}/sharedreward
  mkdir -p $output
  if [ -e $input ]; then
    bash BIDSto3col.sh $input ${output}/run-0${run}
  else
    echo "PATH ERROR: cannot locate ${input}."
    exit
  fi
done
for run in 1 2; do
  input=${maindir}/bids/sub-${sub}/func/sub-${sub}_task-ultimatum_run-0${run}_events.tsv
  output=${baseout}/sub-${sub}/ultimatum
  mkdir -p $output
  if [ -e $input ]; then
    bash BIDSto3col.sh $input ${output}/run-0${run}
  else
    echo "PATH ERROR: cannot locate ${input}."
    exit
  fi
done