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crash-fmriprep_sub-104_stdout.txt
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crash-fmriprep_sub-104_stdout.txt
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[32mThis dataset appears to be BIDS compatible.[39m
[34m[4mSummary:[24m[39m [34m[4mAvailable Tasks:[24m[39m [34m[4mAvailable Modalities:[24m[39m
1219 Files, 10.86GB trust T1w
50 - Subjects TODO: full task name for trust T2w
1 - Session bold
events
fieldmap
[36m If you have any questions, please post on https://neurostars.org/tags/bids.[39m
You are using fMRIPrep-20.1.0, and a newer version of fMRIPrep is available: 20.2.1.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
210108-03:54:10,614 nipype.utils WARNING:
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210108-03:54:27,709 nipype.workflow IMPORTANT:
Running fMRIPREP version 20.1.0:
* BIDS dataset path: /base/bids.
* Participant list: ['149'].
* Run identifier: 20210108-035347_61daf55c-1163-4d85-91bb-6936295df8bf.
* Output spaces: MNI152NLin2009cAsym:res-native.
* Pre-run FreeSurfer's SUBJECTS_DIR: /base/derivatives/freesurfer.
210108-03:54:30,887 nipype.workflow INFO:
No single-band-reference found for sub-149_task-trust_run-01_bold.nii.gz.
210108-03:54:32,663 nipype.workflow IMPORTANT:
Slice-timing correction will be included.
210108-03:54:32,782 nipype.interface INFO:
We advise you to upgrade DIPY version. This upgrade will open access to more function
210108-03:54:32,813 nipype.interface INFO:
We advise you to upgrade DIPY version. This upgrade will open access to more function
210108-03:54:32,816 nipype.interface INFO:
We advise you to upgrade DIPY version. This upgrade will open access to more models
210108-03:54:36,704 nipype.workflow INFO:
No single-band-reference found for sub-149_task-trust_run-02_bold.nii.gz.
210108-03:54:37,912 nipype.workflow IMPORTANT:
Slice-timing correction will be included.
210108-03:54:41,411 nipype.workflow INFO:
No single-band-reference found for sub-149_task-trust_run-03_bold.nii.gz.
210108-03:54:42,706 nipype.workflow IMPORTANT:
Slice-timing correction will be included.
210108-03:54:46,145 nipype.workflow INFO:
No single-band-reference found for sub-149_task-trust_run-04_bold.nii.gz.
210108-03:54:47,256 nipype.workflow IMPORTANT:
Slice-timing correction will be included.
210108-03:54:56,353 nipype.workflow INFO:
fMRIPrep workflow graph with 1212 nodes built successfully.
210108-03:54:59,194 nipype.utils WARNING:
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210108-03:55:18,199 nipype.workflow IMPORTANT:
fMRIPrep started!
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210108-03:56:08,145 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/func_derivatives_wf/raw_sources".
210108-03:56:08,149 nipype.workflow INFO:
[Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:08,157 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.func_derivatives_wf.raw_sources".
210108-03:56:08,884 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/func_derivatives_wf/raw_sources".
210108-03:56:08,888 nipype.workflow INFO:
[Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:08,940 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.func_derivatives_wf.raw_sources".
210108-03:56:09,140 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/func_derivatives_wf/raw_sources".
210108-03:56:09,158 nipype.workflow INFO:
[Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:09,196 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/func_derivatives_wf/raw_sources".
210108-03:56:09,199 nipype.workflow INFO:
[Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:09,205 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.func_derivatives_wf.raw_sources".
210108-03:56:09,234 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.func_derivatives_wf.raw_sources".
210108-03:56:10,76 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg".
210108-03:56:10,78 nipype.workflow INFO:
[Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
210108-03:56:10,481 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg".
210108-03:56:10,604 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg".
210108-03:56:10,605 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg".
210108-03:56:10,607 nipype.workflow INFO:
[Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
210108-03:56:10,626 nipype.workflow INFO:
[Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
210108-03:56:10,698 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/validate".
210108-03:56:10,701 nipype.workflow INFO:
[Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
210108-03:56:10,726 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/validate".
210108-03:56:10,728 nipype.workflow INFO:
[Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
210108-03:56:10,741 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl".
210108-03:56:10,745 nipype.workflow INFO:
[Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1
210108-03:56:10,799 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg".
210108-03:56:10,803 nipype.workflow INFO:
[Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
210108-03:56:10,845 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.validate".
210108-03:56:10,847 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.validate".
210108-03:56:10,897 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg".
210108-03:56:10,908 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg".
210108-03:56:10,957 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/validate".
210108-03:56:10,960 nipype.workflow INFO:
[Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
210108-03:56:10,960 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/validate".
210108-03:56:10,963 nipype.workflow INFO:
[Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
210108-03:56:10,993 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl".
210108-03:56:10,995 nipype.workflow INFO:
[Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1
210108-03:56:11,78 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.bidssrc" in "/scratch/fmriprep_wf/single_subject_149_wf/bidssrc".
210108-03:56:11,82 nipype.workflow INFO:
[Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber")
210108-03:56:11,84 nipype.interface INFO:
No "flair" images found for sub-149
210108-03:56:11,84 nipype.interface INFO:
No "sbref" images found for sub-149
210108-03:56:11,84 nipype.interface INFO:
No "roi" images found for sub-149
210108-03:56:11,85 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.validate".
210108-03:56:11,90 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.bidssrc".
210108-03:56:11,92 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.validate".
210108-03:56:11,116 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg".
210108-03:56:11,345 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct".
210108-03:56:11,915 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct".
210108-03:56:11,925 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct".
210108-03:56:12,547 nipype.workflow INFO:
[Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg/sub-149_magnitude1_avg.nii.gz --output sub-149_magnitude1_avg_corrected.nii.gz
210108-03:56:12,813 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref".
210108-03:56:12,840 nipype.workflow INFO:
[Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210108-03:56:12,995 nipype.workflow INFO:
[Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg/sub-149_magnitude1_avg.nii.gz --output sub-149_magnitude1_avg_corrected.nii.gz
210108-03:56:13,44 nipype.workflow INFO:
[Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg/sub-149_magnitude1_avg.nii.gz --output sub-149_magnitude1_avg_corrected.nii.gz
210108-03:56:13,51 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref".
210108-03:56:13,60 nipype.workflow INFO:
[Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210108-03:56:13,330 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct".
210108-03:56:13,335 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.gen_ref".
210108-03:56:13,544 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.gen_ref".
210108-03:56:13,933 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl".
210108-03:56:14,568 nipype.workflow INFO:
[Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg/sub-149_magnitude1_avg.nii.gz --output sub-149_magnitude1_avg_corrected.nii.gz
210108-03:56:15,44 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref".
210108-03:56:15,57 nipype.workflow INFO:
[Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210108-03:56:15,205 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/anat_template_wf/t1w_ref_dimensions".
210108-03:56:15,386 nipype.workflow INFO:
[Node] Running "t1w_ref_dimensions" ("niworkflows.interfaces.images.TemplateDimensions")
210108-03:56:15,469 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_hmc_wf/mcflirt".
210108-03:56:15,561 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref".
210108-03:56:15,574 nipype.workflow INFO:
[Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210108-03:56:15,667 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.bids_info" in "/scratch/fmriprep_wf/single_subject_149_wf/bids_info".
210108-03:56:15,670 nipype.workflow INFO:
[Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo")
210108-03:56:15,782 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.gen_ref".
210108-03:56:15,782 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions".
210108-03:56:15,782 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.bids_info".
210108-03:56:15,801 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_hmc_wf/mcflirt".
210108-03:56:16,196 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.gen_ref".
210108-03:56:16,707 nipype.workflow INFO:
[Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /base/bids/sub-149/func/sub-149_task-trust_run-01_bold.nii.gz -out /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_hmc_wf/mcflirt/sub-149_task-trust_run-01_bold_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210108-03:56:16,723 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
210108-03:56:16,729 nipype.workflow INFO:
[Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
210108-03:56:16,836 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct".
210108-03:56:16,850 nipype.workflow INFO:
[Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /base/bids/sub-149/func/sub-149_task-trust_run-02_bold.nii.gz -out /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_hmc_wf/mcflirt/sub-149_task-trust_run-02_bold_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210108-03:56:16,983 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct".
210108-03:56:17,70 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct".
210108-03:56:17,410 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_stc_wf.slice_timing_correction" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_stc_wf/slice_timing_correction".
210108-03:56:17,433 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_stc_wf.slice_timing_correction" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_stc_wf/slice_timing_correction".
210108-03:56:17,497 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_hmc_wf/mcflirt".
210108-03:56:17,792 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_hmc_wf/mcflirt".
210108-03:56:18,695 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
210108-03:56:18,701 nipype.workflow INFO:
[Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
210108-03:56:18,723 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet".
210108-03:56:18,727 nipype.workflow INFO:
[Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct/sub-149_magnitude1_avg_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
210108-03:56:18,764 nipype.workflow INFO:
[Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 1 -prefix sub-149_task-trust_run-01_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2.02s /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_stc_wf/slice_timing_correction/sub-149_task-trust_run-01_bold.nii.gz
210108-03:56:18,806 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct".
210108-03:56:18,912 nipype.workflow INFO:
[Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /base/bids/sub-149/func/sub-149_task-trust_run-03_bold.nii.gz -out /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_hmc_wf/mcflirt/sub-149_task-trust_run-03_bold_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210108-03:56:19,2 nipype.workflow INFO:
[Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 1 -prefix sub-149_task-trust_run-02_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2.02s /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_stc_wf/slice_timing_correction/sub-149_task-trust_run-02_bold.nii.gz
210108-03:56:19,145 nipype.workflow INFO:
[Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /base/bids/sub-149/func/sub-149_task-trust_run-04_bold.nii.gz -out /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_hmc_wf/mcflirt/sub-149_task-trust_run-04_bold_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210108-03:56:19,412 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_stc_wf.slice_timing_correction" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_stc_wf/slice_timing_correction".
210108-03:56:19,567 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources".
210108-03:56:20,795 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet".
210108-03:56:20,800 nipype.workflow INFO:
[Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct/sub-149_magnitude1_avg_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
210108-03:56:20,869 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
210108-03:56:20,871 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
210108-03:56:20,874 nipype.workflow INFO:
[Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
210108-03:56:20,877 nipype.workflow INFO:
[Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
210108-03:56:20,943 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet".
210108-03:56:20,949 nipype.workflow INFO:
[Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct/sub-149_magnitude1_avg_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
210108-03:56:20,953 nipype.workflow INFO:
[Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 1 -prefix sub-149_task-trust_run-03_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2.02s /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_stc_wf/slice_timing_correction/sub-149_task-trust_run-03_bold.nii.gz
210108-03:56:21,67 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet".
210108-03:56:21,73 nipype.workflow INFO:
[Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct/sub-149_magnitude1_avg_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
210108-03:56:21,270 nipype.workflow INFO:
[Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:21,277 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources".
210108-03:56:21,430 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_stc_wf.slice_timing_correction" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_stc_wf/slice_timing_correction".
210108-03:56:21,938 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.t1w_conform" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/anat_template_wf/t1w_conform".
210108-03:56:21,944 nipype.workflow INFO:
[Node] Setting-up "_t1w_conform0" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/anat_template_wf/t1w_conform/mapflow/_t1w_conform0".
210108-03:56:21,946 nipype.workflow INFO:
[Node] Running "_t1w_conform0" ("niworkflows.interfaces.images.Conform")
210108-03:56:22,450 nipype.workflow INFO:
[Node] Finished "_t1w_conform0".
210108-03:56:22,452 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.t1w_conform".
210108-03:56:23,128 nipype.workflow INFO:
[Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 3 -prefix sub-149_task-trust_run-04_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2.02s /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_stc_wf/slice_timing_correction/sub-149_task-trust_run-04_bold.nii.gz
210108-03:56:23,237 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.get1st" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/anat_template_wf/get1st".
210108-03:56:25,90 nipype.workflow INFO:
[Node] Running "get1st" ("nipype.interfaces.utility.base.Select")
210108-03:56:25,122 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.anat_template_wf.get1st".
210108-03:56:26,820 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
210108-03:56:27,269 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl".
210108-03:56:28,854 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
210108-03:56:28,941 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
210108-03:56:28,958 nipype.workflow INFO:
[Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0
210108-03:56:29,319 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl".
210108-03:56:29,658 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet".
210108-03:56:30,964 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/truncate_images".
210108-03:56:30,971 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
210108-03:56:30,974 nipype.workflow INFO:
[Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-149_T1w_maths.nii.gz TruncateImageIntensity /base/bids/sub-149/anat/sub-149_T1w.nii.gz 0.01 0.999 256
210108-03:56:31,17 nipype.workflow INFO:
[Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
210108-03:56:31,24 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl".
210108-03:56:31,59 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
210108-03:56:31,81 nipype.workflow INFO:
[Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0
210108-03:56:31,83 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet".
210108-03:56:31,522 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.prelude" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/prelude".
210108-03:56:31,538 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode".
210108-03:56:31,625 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
210108-03:56:31,676 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet".
210108-03:56:31,797 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
210108-03:56:32,145 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet".
210108-03:56:32,716 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
210108-03:56:32,973 nipype.workflow INFO:
[Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0/sub-149_phasediff_rads.nii.gz --unwrap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/prelude/sub-149_phasediff_rads_unwrapped.nii.gz
210108-03:56:32,986 nipype.workflow INFO:
[Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:33,324 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.prelude" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/prelude".
210108-03:56:33,325 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode".
210108-03:56:33,325 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.prelude" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/prelude".
210108-03:56:33,329 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
210108-03:56:33,330 nipype.workflow INFO:
[Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:33,337 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode".
210108-03:56:33,338 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.prelude" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/prelude".
210108-03:56:33,338 nipype.workflow INFO:
[Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0/sub-149_phasediff_rads.nii.gz --unwrap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/prelude/sub-149_phasediff_rads_unwrapped.nii.gz
210108-03:56:33,338 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
210108-03:56:33,338 nipype.workflow INFO:
[Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0/sub-149_phasediff_rads.nii.gz --unwrap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/prelude/sub-149_phasediff_rads_unwrapped.nii.gz
210108-03:56:33,342 nipype.workflow INFO:
[Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:33,347 nipype.workflow INFO:
[Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0
210108-03:56:33,351 nipype.workflow INFO:
[Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0/sub-149_phasediff_rads.nii.gz --unwrap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/prelude/sub-149_phasediff_rads_unwrapped.nii.gz
210108-03:56:33,357 nipype.workflow INFO:
[Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0
210108-03:56:33,388 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.prelude".
210108-03:56:33,450 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode".
210108-03:56:33,576 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode".
210108-03:56:33,655 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode".
210108-03:56:33,780 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.prelude".
210108-03:56:33,781 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.prelude".
210108-03:56:33,790 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.prelude".
210108-03:56:33,829 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode".
210108-03:56:34,992 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210108-03:56:34,999 nipype.workflow INFO:
[Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210108-03:56:35,71 nipype.workflow INFO:
[Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:35,302 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask".
210108-03:56:35,308 nipype.workflow INFO:
[Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -sub /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:35,467 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask".
210108-03:56:35,503 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode".
210108-03:56:35,721 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
210108-03:56:35,965 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask".
210108-03:56:35,971 nipype.workflow INFO:
[Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -sub /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:36,170 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask".
210108-03:56:36,291 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask".
210108-03:56:36,296 nipype.workflow INFO:
[Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -sub /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:36,489 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask".
210108-03:56:36,623 nipype.workflow INFO:
[Node] Finished "_truncate_images0".
210108-03:56:36,626 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.truncate_images".
210108-03:56:36,967 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
210108-03:56:37,296 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise".
210108-03:56:37,300 nipype.workflow INFO:
[Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter/sub-149_phasediff_rads_unwrapped_recentered.nii.gz -kernel sphere 5.0000 -fmedian /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise/sub-149_phasediff_rads_unwrapped_recentered_filt.nii.gz
210108-03:56:37,301 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask".
210108-03:56:37,305 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise".
210108-03:56:37,307 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210108-03:56:37,307 nipype.workflow INFO:
[Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz -sub /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz
210108-03:56:37,307 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise".
210108-03:56:37,307 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210108-03:56:37,308 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise".
210108-03:56:37,308 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/inu_n4".
210108-03:56:37,310 nipype.workflow INFO:
[Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter/sub-149_phasediff_rads_unwrapped_recentered.nii.gz -kernel sphere 5.0000 -fmedian /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise/sub-149_phasediff_rads_unwrapped_recentered_filt.nii.gz
210108-03:56:37,312 nipype.workflow INFO:
[Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter/sub-149_phasediff_rads_unwrapped_recentered.nii.gz -kernel sphere 5.0000 -fmedian /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise/sub-149_phasediff_rads_unwrapped_recentered_filt.nii.gz
210108-03:56:37,313 nipype.workflow INFO:
[Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210108-03:56:37,313 nipype.workflow INFO:
[Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210108-03:56:37,314 nipype.workflow INFO:
[Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter/sub-149_phasediff_rads_unwrapped_recentered.nii.gz -kernel sphere 5.0000 -fmedian /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise/sub-149_phasediff_rads_unwrapped_recentered_filt.nii.gz
210108-03:56:37,315 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
210108-03:56:37,318 nipype.workflow INFO:
[Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-149_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-149_T1w_maths_corrected.nii.gz --shrink-factor 4
210108-03:56:37,572 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask".
210108-03:56:37,942 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise".
210108-03:56:38,100 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise".
210108-03:56:38,157 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
210108-03:56:38,259 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise".
210108-03:56:38,295 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise".
210108-03:56:38,417 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210108-03:56:39,301 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean".
210108-03:56:39,303 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210108-03:56:39,303 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean".
210108-03:56:39,304 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean".
210108-03:56:39,306 nipype.workflow INFO:
[Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:39,307 nipype.workflow INFO:
[Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:39,308 nipype.workflow INFO:
[Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:39,309 nipype.workflow INFO:
[Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
210108-03:56:39,310 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean".
210108-03:56:39,311 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210108-03:56:39,313 nipype.workflow INFO:
[Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:39,324 nipype.workflow INFO:
[Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210108-03:56:39,802 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210108-03:56:40,32 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_stc_wf.slice_timing_correction".
210108-03:56:40,185 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean".
210108-03:56:40,263 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean".
210108-03:56:40,263 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean".
210108-03:56:40,263 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean".
210108-03:56:40,500 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210108-03:56:40,602 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_stc_wf.slice_timing_correction".
210108-03:56:40,666 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210108-03:56:41,305 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike".
210108-03:56:41,313 nipype.workflow INFO:
[Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz --savefmap=sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz
210108-03:56:41,327 nipype.interface WARNING:
q-forms of reference and mask are substantially different
210108-03:56:41,663 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_stc_wf.copy_xform" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_stc_wf/copy_xform".
210108-03:56:41,664 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike".
210108-03:56:41,665 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210108-03:56:41,668 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_stc_wf.copy_xform" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_stc_wf/copy_xform".
210108-03:56:41,668 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike".
210108-03:56:41,669 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210108-03:56:41,670 nipype.workflow INFO:
[Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
210108-03:56:41,670 nipype.workflow INFO:
[Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz --savefmap=sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz
210108-03:56:41,671 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike".
210108-03:56:41,674 nipype.workflow INFO:
[Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
210108-03:56:41,675 nipype.workflow INFO:
[Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz --savefmap=sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz
210108-03:56:41,679 nipype.workflow INFO:
[Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz --savefmap=sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz --mask=/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-149_magnitude1_avg_corrected_brain_mask.nii.gz
210108-03:56:41,679 nipype.workflow INFO:
[Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210108-03:56:41,698 nipype.workflow INFO:
[Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210108-03:56:41,807 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike".
210108-03:56:41,851 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_stc_wf.slice_timing_correction".
210108-03:56:42,56 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210108-03:56:42,80 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210108-03:56:42,241 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike".
210108-03:56:42,250 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike".
210108-03:56:42,254 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike".
210108-03:56:42,331 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210108-03:56:43,387 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask".
210108-03:56:43,388 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210108-03:56:43,389 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask".
210108-03:56:43,392 nipype.workflow INFO:
[Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz -nan -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz
210108-03:56:43,395 nipype.workflow INFO:
[Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz -nan -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz
210108-03:56:43,412 nipype.interface WARNING:
q-forms of reference and mask are substantially different
210108-03:56:43,612 nipype.workflow INFO:
[Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210108-03:56:43,620 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask".
210108-03:56:43,718 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask".
210108-03:56:43,724 nipype.workflow INFO:
[Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz -nan -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz
210108-03:56:43,734 nipype.interface WARNING:
q-forms of reference and mask are substantially different
210108-03:56:43,739 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask".
210108-03:56:43,908 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask".
210108-03:56:43,912 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_stc_wf.slice_timing_correction".
210108-03:56:44,2 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_stc_wf.copy_xform" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_stc_wf/copy_xform".
210108-03:56:44,3 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask".
210108-03:56:44,3 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210108-03:56:44,7 nipype.workflow INFO:
[Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210108-03:56:44,9 nipype.workflow INFO:
[Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz -nan -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz
210108-03:56:44,9 nipype.workflow INFO:
[Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
210108-03:56:44,225 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask".
210108-03:56:44,467 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210108-03:56:45,286 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Merge".
210108-03:56:45,286 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Merge".
210108-03:56:45,288 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210108-03:56:45,289 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Merge".
210108-03:56:45,289 nipype.workflow INFO:
[Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
210108-03:56:45,291 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Merge".
210108-03:56:45,291 nipype.workflow INFO:
[Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
210108-03:56:45,291 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210108-03:56:45,294 nipype.workflow INFO:
[Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
210108-03:56:45,296 nipype.workflow INFO:
[Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
210108-03:56:45,311 nipype.interface WARNING:
q-forms of reference and mask are substantially different
210108-03:56:45,320 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge".
210108-03:56:45,320 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge".
210108-03:56:45,320 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge".
210108-03:56:45,320 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge".
210108-03:56:45,337 nipype.workflow INFO:
[Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210108-03:56:45,520 nipype.workflow INFO:
[Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210108-03:56:45,579 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_stc_wf.copy_xform".
210108-03:56:45,612 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_stc_wf.copy_xform" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_stc_wf/copy_xform".
210108-03:56:45,617 nipype.workflow INFO:
[Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210108-03:56:46,535 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_stc_wf.copy_xform".
210108-03:56:47,353 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge".
210108-03:56:47,354 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_split".
210108-03:56:47,355 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge".
210108-03:56:47,357 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_split".
210108-03:56:47,357 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge".
210108-03:56:47,358 nipype.workflow INFO:
[Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_stc_wf/copy_xform/sub-149_task-trust_run-01_bold_tshift_xform.nii.gz -t
210108-03:56:47,359 nipype.workflow INFO:
[Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_maths.nii.gz
210108-03:56:47,360 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge".
210108-03:56:47,361 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210108-03:56:47,361 nipype.workflow INFO:
[Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_stc_wf/copy_xform/sub-149_task-trust_run-02_bold_tshift_xform.nii.gz -t
210108-03:56:47,361 nipype.workflow INFO:
[Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_maths.nii.gz
210108-03:56:47,363 nipype.workflow INFO:
[Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_maths.nii.gz
210108-03:56:47,366 nipype.workflow INFO:
[Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-149_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz -mas /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-149_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge/sub-149_phasediff_rads_unwrapped_recentered_filt_demean_maths.nii.gz
210108-03:56:47,564 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge".
210108-03:56:47,583 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge".
210108-03:56:47,601 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge".
210108-03:56:47,616 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge".
210108-03:56:47,621 nipype.workflow INFO:
[Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210108-03:56:47,906 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210108-03:56:48,351 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_stc_wf.copy_xform".
210108-03:56:49,293 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.fmap2field_wf.get_ees" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/fmap2field_wf/get_ees".
210108-03:56:49,295 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210108-03:56:49,296 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.compfmap" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/sdc_estimate_wf/phdiff_wf/compfmap".
210108-03:56:49,296 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_split".
210108-03:56:49,300 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
210108-03:56:49,300 nipype.workflow INFO:
[Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_stc_wf/copy_xform/sub-149_task-trust_run-03_bold_tshift_xform.nii.gz -t
210108-03:56:49,301 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.compfmap" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/phdiff_wf/compfmap".
210108-03:56:49,303 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.compfmap" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/phdiff_wf/compfmap".
210108-03:56:49,303 nipype.workflow INFO:
[Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:49,306 nipype.workflow INFO:
[Node] Running "compfmap" ("sdcflows.interfaces.fmap.Phasediff2Fieldmap")
210108-03:56:49,307 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.compfmap" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/phdiff_wf/compfmap".
210108-03:56:49,312 nipype.workflow INFO:
[Node] Running "compfmap" ("sdcflows.interfaces.fmap.Phasediff2Fieldmap")
210108-03:56:49,312 nipype.workflow INFO:
[Node] Running "compfmap" ("sdcflows.interfaces.fmap.Phasediff2Fieldmap")
210108-03:56:49,316 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.fmap2field_wf.get_ees".
210108-03:56:49,318 nipype.workflow INFO:
[Node] Running "compfmap" ("sdcflows.interfaces.fmap.Phasediff2Fieldmap")
210108-03:56:49,352 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.sdc_estimate_wf.phdiff_wf.compfmap".
210108-03:56:49,352 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.phdiff_wf.compfmap".
210108-03:56:49,360 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.phdiff_wf.compfmap".
210108-03:56:49,360 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.phdiff_wf.compfmap".
210108-03:56:49,623 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210108-03:56:49,906 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_stc_wf.copy_xform".
210108-03:56:49,926 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210108-03:56:51,301 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.fmap2field_wf.get_ees" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/sdc_estimate_wf/fmap2field_wf/get_ees".
210108-03:56:51,303 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210108-03:56:51,306 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.fmap2field_wf.get_ees" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/sdc_estimate_wf/fmap2field_wf/get_ees".
210108-03:56:51,306 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_split".
210108-03:56:51,306 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210108-03:56:51,308 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
210108-03:56:51,309 nipype.workflow INFO:
[Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:51,310 nipype.workflow INFO:
[Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_stc_wf/copy_xform/sub-149_task-trust_run-04_bold_tshift_xform.nii.gz -t
210108-03:56:51,314 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
210108-03:56:51,314 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210108-03:56:51,315 nipype.workflow INFO:
[Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function")
210108-03:56:51,320 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.sdc_estimate_wf.fmap2field_wf.get_ees".
210108-03:56:51,326 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_03_wf.sdc_estimate_wf.fmap2field_wf.get_ees".
210108-03:56:51,869 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210108-03:56:53,244 nipype.workflow INFO:
[Node] Finished "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210108-03:56:53,262 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210108-03:56:53,262 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.sdc_estimate_wf.fmap2field_wf.get_ees" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/sdc_estimate_wf/fmap2field_wf/get_ees".
210108-03:56:53,262 nipype.workflow INFO:
[Node] Setting-up "fmriprep_wf.single_subject_149_wf.func_preproc_task_trust_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210108-03:56:53,267 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
210108-03:56:53,267 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_149_wf/func_preproc_task_trust_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz