From 1d957533ff12e7671050bf1b70726862b509029c Mon Sep 17 00:00:00 2001
From: Laura A DeCicco <ldecicco@usgs.gov>
Date: Wed, 31 Jul 2024 09:11:57 -0500
Subject: [PATCH] update GH actions?

---
 .github/workflows/R-CMD-check.yaml    | 16 +++--
 .github/workflows/style-and-lint.yaml | 85 ---------------------------
 2 files changed, 10 insertions(+), 91 deletions(-)
 delete mode 100644 .github/workflows/style-and-lint.yaml

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 1eed1ac8..d3b52d60 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main]
 
-name: R-CMD-checka
+name: R-CMD-check
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -20,6 +22,7 @@ jobs:
         config:
           - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
 
@@ -28,21 +31,22 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@c0a81a463886bb75afe234e07a9fd5bb79219196
+      - uses: actions/checkout@9a9194f87191a7e9055e3e9b95b8cfb13023bb08
 
-      - uses: r-lib/actions/setup-pandoc@756399d909bf9c180bbdafe8025f794f51f2da02
+      - uses: r-lib/actions/setup-pandoc@6012817847b5f064d0882d67a7b5e2ca6639afb2
 
-      - uses: r-lib/actions/setup-r@756399d909bf9c180bbdafe8025f794f51f2da02
+      - uses: r-lib/actions/setup-r@15cf1013badbaf6d25f100593ad5d7d75e65d64b
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@756399d909bf9c180bbdafe8025f794f51f2da02
+      - uses: r-lib/actions/setup-r-dependencies@96b1dc658a45175f93ed5f33fda2b2cebbb12ee8
         with:
           extra-packages: any::rcmdcheck
           needs: check
 
-      - uses: r-lib/actions/check-r-package@756399d909bf9c180bbdafe8025f794f51f2da02
+      - uses: r-lib/actions/check-r-package@3e56ca41aa267855f36891af7a495d24bfaa8373
         with:
           upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
diff --git a/.github/workflows/style-and-lint.yaml b/.github/workflows/style-and-lint.yaml
deleted file mode 100644
index ce0decbc..00000000
--- a/.github/workflows/style-and-lint.yaml
+++ /dev/null
@@ -1,85 +0,0 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-# Only run when PR is opened to the main branch, and changes are made to these types of R files
-on:
-  pull_request:
-    paths: ["**.[rR]", "**.[rR]md", "**.[rR]markdown", "**.[rR]nw"]
-    branches: [main]
-
-name: Style and Lint
-
-jobs:
-  # First run styler and push style changes to feature branch
-  style:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-    steps:
-      - name: Checkout repo
-        uses: actions/checkout@c0a81a463886bb75afe234e07a9fd5bb79219196
-        with:
-          fetch-depth: 0
-
-      - name: Setup R
-        uses: r-lib/actions/setup-r@52330cc136b963487918a8867f948ddf954e9e63
-        with:
-          use-public-rspm: true
-
-      - name: Install dependencies
-        uses: r-lib/actions/setup-r-dependencies@52330cc136b963487918a8867f948ddf954e9e63
-        with:
-          extra-packages: any::styler
-          needs: styler
-
-      - name: Enable styler cache
-        run: styler::cache_activate()
-        shell: Rscript {0}
-
-      - name: Determine cache location
-        id: styler-location
-        run: |
-          cat(
-            "##[set-output name=location;]",
-            styler::cache_info(format = "tabular")$location,
-            "\n",
-            sep = ""
-          )
-        shell: Rscript {0}
-
-      - name: Cache styler
-        uses: actions/cache@v2
-        with:
-          path: ${{ steps.styler-location.outputs.location }}
-          key: ${{ runner.os }}-styler-${{ github.sha }}
-          restore-keys: |
-            ${{ runner.os }}-styler-
-            ${{ runner.os }}-
-
-      - name: Run styler on all files containing R code
-        run: styler::style_pkg(filetype = c(".R", ".Rmd", ".Rmarkdown", ".Rnw"))
-        shell: Rscript {0}
-
-      - name: Commit and push changes
-        uses: stefanzweifel/git-auto-commit-action@v4
-        with:
-          commit_message: Style Code
-
-  # Next run lintr to annotate the PR with anything caught by the linter that wasn't changed by styler
-  lint:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-    steps:
-      - uses: actions/checkout@c0a81a463886bb75afe234e07a9fd5bb79219196
-
-      - uses: r-lib/actions/setup-r@52330cc136b963487918a8867f948ddf954e9e63
-        with:
-          use-public-rspm: true
-
-      - name: Install lintr
-        run: install.packages("lintr")
-        shell: Rscript {0}
-
-      - name: Run lintr on the package
-        run: lintr::lint_package()
-        shell: Rscript {0}