submit_slurm.template

#!/bin/bash
#

cd $SLURM_SUBMIT_DIR

#. /usr/local/Modules/default/init/bash

module load python/3.4.0
D=/home/fake
R=/home/fake

rm $R/Reports/snakemake.log
rm $R/Reports/makeasnake.log
touch $R/Reports/makeasnake.log
touch $R/Reports/snakemake.log

sbatch --partition=ccr,norm --gres=lscratch:200 --time=120:00:00 --mail-type=BEGIN,END,FAIL $R/pipeline_ctrl.sh
# sbatch --partition=ccr,norm --gres=lscratch:200 --time=120:00:00  $R/pipeline_ctrl.sh