Merge branch 'main' into new_eum

Author: ecomodeller

.github/workflows/docs.yml

@@ -9,11 +9,11 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
-        python-version: 3.11
+        python-version: 3.12
 
     - name: Install dependencies
       run: |
@@ -32,3 +32,4 @@ jobs:
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: docs/_site/
+      

.github/workflows/downstream_test.yml

@@ -10,11 +10,11 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
-        python-version: 3.9
+        python-version: "3.10"
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

.github/workflows/full_test.yml

@@ -5,28 +5,26 @@ name: Full test
 
 on:
   push:
-    branches: [ main]
+    branches: [main]
   pull_request:
-    branches: [ main ]
-
+    branches: [main]
 
 jobs:
   build:
 
-    runs-on: ${{ matrix.os }}
+    runs-on: ubuntu-latest
     strategy:
       matrix:
-        os: [ubuntu-latest, windows-latest]
-        python-version: [3.9, "3.12"]
+        python-version: ["3.10", "3.13"]
 
     steps:
-    - uses: actions/checkout@v3
-    - uses: chartboost/ruff-action@v1 # Fail fast if there are any linting errors
+    - uses: actions/checkout@v4
+    - uses: astral-sh/ruff-action@v2 # Fail fast if there are any linting errors
       with:
         version: 0.6.2 # consistent with pyproject.toml ?
         src: mikeio # ignore notebooks
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -44,3 +42,13 @@ jobs:
       run: make doctest
     - name: Static type check
       run: make typecheck
+    - name: Build package
+      run: |
+        pip install build wheel twine
+        python -m build
+        
+    - name: Upload build artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: dist-${{matrix.python-version}}
+        path: dist/*

.github/workflows/legacy_test.yml

@@ -13,11 +13,11 @@ jobs:
         runs-on: ubuntu-latest
 
         steps:
-        - uses: actions/checkout@v3
+        - uses: actions/checkout@v4
         - name: Set up Python
-          uses: actions/setup-python@v4
+          uses: actions/setup-python@v5
           with:
-            python-version: 3.9
+            python-version: "3.10"
 
         - name: Install MIKE IO
           run: |

.github/workflows/notebooks_test.yml

@@ -14,11 +14,11 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.9'    
+        python-version: "3.13"    
     - name: Install mikeio
       run: |
         pip install .[test,notebooks]    

.github/workflows/perf_test.yml

@@ -17,9 +17,9 @@ jobs:
         python-version: ["3.10"]
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies

.github/workflows/python-publish.yml

@@ -9,28 +9,52 @@ on:
   workflow_dispatch:
 
 jobs:
-  deploy:
 
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest]
+        python-version: ["3.10", "3.13"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install pytest
+        
+    - name: Install mikeio
+      run: |
+        pip install .[test]
+    - name: Test with pytest
+      run: |
+        pytest --ignore tests/performance/ --ignore tests/notebooks/ --disable-warnings
+
+  deploy:
+    needs: test
     runs-on: ubuntu-latest
     permissions:
       # IMPORTANT: this permission is mandatory for trusted publishing
       id-token: write
 
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.13'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         pip install build wheel twine
     - name: Install mikeio
       run: pip install .[test]
-    - name: Test
-      run: pytest
     - name: Build
       run: python -m build
     - name: Publish package distributions to PyPI

.gitignore

@@ -35,4 +35,10 @@ docs/api/
 
 .testmondata
 objects.json
-.jupyter_cache/
+.jupyter_cache/
+
+# direnv
+.envrc
+
+# useful, but not sure if it should be in source control
+uv.lock

.pre-commit-config.yaml

@@ -0,0 +1,9 @@
+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.8.6
+    hooks:
+      # Run the linter.
+      - id: ruff
+      # Run the formatter.
+      - id: ruff-format