version.xml

<package name='SA' version='2.1.1'>
  <depends on='BEAST.base' atleast='2.7.0'/>
  <depends on='BEAST.app' atleast='2.7.0'/>
	<depends on='BEASTLabs' atleast='2.0.0'/>
	
	  <packageapp description="SampledAncestorTreeAnalyser"
              class="sa.app.tools.SampledAncestorTreeAnalyser"
              args=""
            />

    <packageapp description="FullToExtantTreeConverter"
              class="sa.app.tools.FullToExtantTreeConverter"
              args=""
            />

    <service type="beastfx.app.inputeditor.InputEditor">
        <provider classname="sa.beauti.SAMRCAPriorInputEditor"/>
        <provider classname="sa.beauti.SampledNodeDataWalkerInputEditor"/>
    </service>

    <service type="beastfx.app.beauti.PriorProvider">
        <provider classname="sa.beauti.SAMRCAPriorProvider"/>
    </service>


    <service type="beast.base.core.BEASTInterface">
        <provider classname="sa.app.tools.FullToExtantTreeConverter"/>
        <provider classname="sa.app.tools.SampledAncestorTreeAnalyser"/>
        <provider classname="sa.evolution.operators.Binary"/>
        <provider classname="sa.evolution.operators.IntRandomWalkWithExclusion"/>
        <provider classname="sa.evolution.operators.IntSwapWithExclusion"/>
        <provider classname="sa.evolution.operators.IntUniformWithExclusion"/>
        <provider classname="sa.evolution.operators.JumpToPoint"/>
        <provider classname="sa.evolution.operators.LeafToSampledAncestorJump"/>
        <provider classname="sa.evolution.operators.SAExchange"/>
        <provider classname="sa.evolution.operators.SampledNodeDateRandomWalker"/>
        <provider classname="sa.evolution.operators.SAScaleOperator"/>
        <provider classname="sa.evolution.operators.SAUniform"/>
        <provider classname="sa.evolution.operators.SAWilsonBalding"/>
        <provider classname="sa.evolution.operators.TreeDimensionJump"/>
        <provider classname="sa.evolution.operators.WilsonBaldingWithRateCategories"/>
        <provider classname="sa.evolution.speciation.DiversificationTurnoverParameterization"/>
        <provider classname="sa.evolution.speciation.DiversificationTurnoverPsiExpectedNParameterization"/>
        <provider classname="sa.evolution.speciation.ParameterizedSABirthDeathModel"/>
        <provider classname="sa.evolution.speciation.ProbabilitySA"/>
        <provider classname="sa.evolution.speciation.RateParameterization"/>
        <provider classname="sa.evolution.speciation.SABirthDeathModel"/>
        <provider classname="sa.evolution.tree.AncestryConstraint"/>
        <provider classname="sa.evolution.tree.CladeConstraint"/>
        <provider classname="sa.evolution.tree.OffsetLogger"/>
        <provider classname="sa.evolution.tree.SampledAncestorLogger"/>
        <provider classname="sa.evolution.tree.SamplingDate"/>
        <provider classname="sa.evolution.tree.TreeWOffset"/>
        <provider classname="sa.math.distributions.DegenerateBeta"/>
        <provider classname="sa.math.distributions.DegenerateUniform"/>
        <provider classname="sa.math.distributions.SpecialMRCAPrior"/>
        <provider classname="sa.math.distributions.SAMRCAPrior"/>
        <provider classname="sa.util.ClusterZBSATree"/>
        <provider classname="sa.util.ZeroBranchSATreeParser"/>
    </service>


    <!-- for backward compatibility -->
    <map from="beast.evolution.operators.JumpToPoint" to="sa.evolution.operators.JumpToPoint"/>
    <map from="beast.evolution.operators.LeafToSampledAncestorJump" to="sa.evolution.operators.LeafToSampledAncestorJump"/>
    <map from="beast.evolution.operators.SAExchange" to="sa.evolution.operators.SAExchange"/>
    <map from="beast.evolution.operators.SampledNodeDateRandomWalker" to="sa.evolution.operators.SampledNodeDateRandomWalker"/>
    <map from="beast.evolution.operators.SAScaleOperator" to="sa.evolution.operators.SAScaleOperator"/>
    <map from="beast.evolution.operators.SAUniform" to="sa.evolution.operators.SAUniform"/>
    <map from="beast.evolution.operators.SAWilsonBalding" to="sa.evolution.operators.SAWilsonBalding"/>
    <map from="beast.evolution.operators.TreeDimensionJump" to="sa.evolution.operators.TreeDimensionJump"/>
    <map from="beast.evolution.operators.WilsonBaldingWithRateCategories" to="sa.evolution.operators.WilsonBaldingWithRateCategories"/>
    <map from="beast.evolution.speciation.SABirthDeathModel" to="sa.evolution.speciation.SABirthDeathModel"/>
    <map from="beast.evolution.tree.SampledAncestorLogger" to="sa.evolution.tree.SampledAncestorLogger"/>
    <map from="beast.evolution.tree.SamplingDate" to="sa.evolution.tree.SamplingDate"/>



</package>