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packages-extra-2.7.xml
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packages-extra-2.7.xml
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<!-- Extra package file for v2.7.X packages -->
<!-- Suitable for packages that are not peer-reviewed -->
<!-- Peer reviewed packages can go in packages2.7.xml -->
<packages>
<package name="AlmostDistributions" version="0.2.0"
url="https://github.com/rbouckaert/AlmostDistributions/releases/download/v0.2.0/AlmostDistributions.addon.v0.2.0.zip"
description="Almost-distributions"
projectURL="https://github.com/rbouckaert/AlmostDistributions">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name="Experimenter" version="0.2.0"
url="https://github.com/christiaanjs/beast-validation/releases/download/v0.2.0/Experimenter.addon.v0.2.0.zip"
description="Experimenter"
projectURL="https://github.com/christiaanjs/beast-validation/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name="IndelDollo" version="0.0.1"
url="https://github.com/jordandouglas/IndelDollo/releases/download/0.0.1/IndelDollo.addon.v0.0.1.zip"
description="Mutations, insertions, and deletions"
projectURL="https://github.com/jordandouglas/IndelDollo/">
<depends on='BEAST.base' atleast='2.7.3'/>
<depends on='BEAST.app' atleast='2.7.3'/>
</package>
<package name="CorrelatedTrait" version="0.0.5"
url="https://github.com/rbouckaert/CorrelatedTrait/releases/download/v0.0.5/CorrelatedTrait.package.v0.0.5.zip"
description="Analysis for a fixed tree or fixed tree set"
projectURL="https://github.com/rbouckaert/CorrelatedTrait">
<depends on='BEAST.base' atleast='2.7.4'/>
<depends on='BEAST.app' atleast='2.7.4'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
<depends on='BEAST_CLASSIC' atleast='1.6.1'/>
<depends on='Babel' atleast='0.4.1'/>
</package>
<package name="ASM" version="0.0.1"
url="https://github.com/rbouckaert/asm/releases/download/v0.0.1/ASM.package.v0.0.1.zip"
description="Automatic stopping MCMC"
projectURL="https://github.com/rbouckaert/asm">
<depends on='BEAST.base' atleast='2.7.5'/>
<depends on='BEAST.app' atleast='2.7.5'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='HetMM' version='0.0.1'
url="https://github.com/jordandouglas/HetMM/releases/download/v0.0.1/HetMM.addon.v0.0.1.zip"
description="Heterogeneous Michaelis-Menten model"
projectURL="https://github.com/jordandouglas/HetMM">
<depends on='BEAST.base' atleast='2.7.5'/>
<depends on='BEAST.app' atleast='2.7.5'/>
</package>
<package name='FoldBeast' version='0.0.1'
url="https://github.com/jordandouglas/FoldBeast/releases/download/v0.0.1/FoldBeast.package.v0.0.1.zip"
description="3Di characters in phylogenetics"
projectURL="https://github.com/jordandouglas/FoldBeast/">
<depends on='BEAST.base' atleast='2.7.5'/>
<depends on='BEAST.app' atleast='2.7.5'/>
<depends on='bModelTest' atleast='1.3.0'/>
<depends on='OBAMA' atleast='1.1.1'/>
</package>
<package name='gammaspike' version='0.0.1'
url="https://github.com/jordandouglas/GammaSpikeModel/releases/download/v0.0.1/gammaspike.package.v0.0.1.zip"
description="A punctuated equilibrium clock model"
projectURL="https://github.com/jordandouglas/GammaSpikeModel">
<depends on='BEAST.base' atleast='2.7.7'/>
<depends on='BEAST.app' atleast='2.7.7'/>
<depends on='SA' atleast='2.1.1'/>
</package>
<package name='gammaspike' version='0.0.2'
url="https://github.com/jordandouglas/GammaSpikeModel/releases/download/v0.0.2/gammaspike.package.v0.0.2.zip"
description="A punctuated equilibrium clock model"
projectURL="https://github.com/jordandouglas/GammaSpikeModel">
<depends on='BEAST.base' atleast='2.7.7'/>
<depends on='BEAST.app' atleast='2.7.7'/>
<depends on='SA' atleast='2.1.1'/>
</package>
<package name='gammaspike' version='0.0.3'
url="https://github.com/jordandouglas/GammaSpikeModel/releases/download/v0.0.3/gammaspike.package.v0.0.3.zip"
description="A punctuated equilibrium clock model"
projectURL="https://github.com/jordandouglas/GammaSpikeModel">
<depends on='BEAST.base' atleast='2.7.7'/>
<depends on='BEAST.app' atleast='2.7.7'/>
<depends on='SA' atleast='2.1.1'/>
</package>
<package name="CCD" version="0.0.4"
url="https://github.com/CompEvol/CCD/releases/download/v0.0.1/CCD.package.v0.0.4.zip"
projectURL="https://github.com/CompEvol/CCD"
description="Sensible tree set summary/point estimates.">
<depends on='BEAST.base' atleast='2.7.6'/>
<depends on='BEAST.app' atleast='2.7.6'/>
</package>
<package name="BREATH" version="0.0.1"
url="https://github.com/rbouckaert/transmission/releases/download/v0.0.1/BREATH.v0.0.1.zip"
projectURL="https://github.com/rbouckaert/transmission"
description="Bayesian Reconstruction and Evolutionary Analysis of Transmission Histories">
<depends on='BEAST.base' atleast='2.7.6'/>
<depends on='BEAST.app' atleast='2.7.6'/>
</package>
<package name="5rf" version="0.0.1"
url="https://github.com/rbouckaert/5rf/releases/download/v0.0.1/5rf.package.v0.0.1.zip"
projectURL="https://github.com/rbouckaert/5rf/"
description="Rate Class Root Frequency Model">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name="RBS" version="1.5.0"
url="https://github.com/BEAST2-Dev/rb-beast/releases/download/v1.5.0/RBS.package.v1.5.0.zip"
projectURL="https://github.com/BEAST2-Dev/rb-beast/"
description="AutoPartition and Reverisble Jump Based substitution model">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name="rootfreqs" version="0.0.2"
url="https://github.com/rbouckaert/rootfreqs/releases/download/v0.0.2/rootfreqs.package.v0.0.2.zip"
projectURL="https://github.com/rbouckaert/rootfreqs"
description="Allows root frequencies to be specified per site.">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name="EpochClockModel" version="0.0.2"
url="https://github.com/rbouckaert/EpochClockModel/releases/download/v0.0.2/EpochClockModel.v0.0.2.zip"
projectURL="https://github.com/rbouckaert/EpochClockModel"
description="Add clock models that have different mean rates at different epochs">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
</packages>