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version.xml
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version.xml
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<package name='BEAST.app' version='2.7.7'>
<depends on='BEAST.base' atleast='2.7.7' atmost="2.7.9"/>
<service type="beastfx.app.beauti.ThemeProvider">
<provider classname="beastfx.app.beauti.theme.Default"/>
<provider classname="beastfx.app.beauti.theme.Dark"/>
<provider classname="beastfx.app.beauti.theme.Bootstrap"/>
<provider classname="beastfx.app.beauti.theme.Fluent"/>
<provider classname="beastfx.app.beauti.theme.Win7"/>
<provider classname="beastfx.app.beauti.theme.Metro"/>
</service>
<service type="beastfx.app.inputeditor.InputEditor">
<provider classname="beastfx.app.inputeditor.BEASTObjectInputEditor"/>
<provider classname="beastfx.app.inputeditor.TypeTraitSetInputEditor"/>
<provider classname="beastfx.app.inputeditor.BooleanInputEditor"/>
<provider classname="beastfx.app.inputeditor.ConstantInputEditor"/>
<provider classname="beastfx.app.inputeditor.DoubleInputEditor"/>
<provider classname="beastfx.app.inputeditor.DoubleListInputEditor"/>
<provider classname="beastfx.app.inputeditor.EnumInputEditor"/>
<provider classname="beastfx.app.inputeditor.FileInputEditor"/>
<provider classname="beastfx.app.inputeditor.FileListInputEditor"/>
<provider classname="beastfx.app.inputeditor.IntegerInputEditor"/>
<provider classname="beastfx.app.inputeditor.IntegerListInputEditor"/>
<provider classname="beastfx.app.inputeditor.ListInputEditor"/>
<provider classname="beastfx.app.inputeditor.LongInputEditor"/>
<provider classname="beastfx.app.inputeditor.OutFileInputEditor"/>
<provider classname="beastfx.app.inputeditor.OutFileListInputEditor"/>
<provider classname="beastfx.app.inputeditor.ParameterInputEditor"/>
<provider classname="beastfx.app.inputeditor.ParametricDistributionInputEditor"/>
<provider classname="beastfx.app.inputeditor.SiteModelInputEditor"/>
<provider classname="beastfx.app.inputeditor.StringInputEditor"/>
<provider classname="beastfx.app.inputeditor.TreeFileInputEditor"/>
<provider classname="beastfx.app.inputeditor.TreeFileListInputEditor"/>
<provider classname="beastfx.app.inputeditor.XMLFileInputEditor"/>
<provider classname="beastfx.app.inputeditor.XMLFileListInputEditor"/>
<provider classname="beastfx.app.beauti.PriorInputEditor"/>
<provider classname="beastfx.app.beauti.PriorListInputEditor"/>
<provider classname="beastfx.app.inputeditor.AlignmentListInputEditor"/>
<provider classname="beastfx.app.inputeditor.LogFileInputEditor"/>
<provider classname="beastfx.app.inputeditor.LogFileListInputEditor"/>
<provider classname="beastfx.app.inputeditor.LoggerListInputEditor"/>
<provider classname="beastfx.app.inputeditor.MRCAPriorInputEditor"/>
<provider classname="beastfx.app.inputeditor.TaxonSetInputEditor"/>
<provider classname="beastfx.app.inputeditor.TaxonSetListInputEditor"/>
<provider classname="beastfx.app.inputeditor.TipDatesInputEditor"/>
<provider classname="beastfx.app.beauti.ClockModelListInputEditor"/>
<provider classname="beastfx.app.beauti.ConstantPopulationInputEditor"/>
<provider classname="beastfx.app.beauti.ExponentialPopulationInputEditor"/>
<provider classname="beastfx.app.beauti.ScaledPopulationInputEditor"/>
<provider classname="beastfx.app.beauti.GeneTreeForSpeciesTreeDistributionInputEditor"/>
<provider classname="beastfx.app.beauti.OperatorListInputEditor"/>
<provider classname="beastfx.app.beauti.SpeciesTreePriorInputEditor"/>
<provider classname="beastfx.app.beauti.StateNodeInitialiserListInputEditor"/>
<provider classname="beastfx.app.beauti.StateNodeListInputEditor"/>
<provider classname="beastfx.app.beauti.TreeDistributionInputEditor"/>
<!--
-->
</service>
<!-- AlignmentImporter declares classes for parsing different alignment formats -->
<service type="beastfx.app.inputeditor.AlignmentImporter">
<provider classname="beastfx.app.inputeditor.NexusImporter"/>
<provider classname="beastfx.app.inputeditor.FastaImporter"/>
<provider classname="beastfx.app.inputeditor.XMLImporter"/>
</service>
<service type="beast.base.core.BEASTInterface">
<provider classname="beastfx.app.beauti.Fragment"/>
<provider classname="beastfx.app.draw.BEASTObjectSet"/>
<provider classname="beastfx.app.inputeditor.BeautiAlignmentProvider"/>
<provider classname="beastfx.app.inputeditor.BeautiConfig"/>
<provider classname="beastfx.app.inputeditor.BeautiConnector"/>
<provider classname="beastfx.app.inputeditor.BeautiDoc"/>
<provider classname="beastfx.app.inputeditor.BeautiPanelConfig"/>
<provider classname="beastfx.app.inputeditor.BeautiSubTemplate"/>
<provider classname="beastfx.app.seqgen.MergeDataWith"/>
<provider classname="beastfx.app.seqgen.SequenceSimulator"/>
<provider classname="beastfx.app.seqgen.SimulatedAlignment"/>
<provider classname="beastfx.app.tools.ClassEnumerator"/>
<provider classname="beastfx.app.tools.JarHealthChecker"/>
<provider classname="beastfx.app.tools.PackageHealthChecker"/>
</service>
<service type="beastfx.app.beauti.PriorProvider">
<provider classname="beastfx.app.beauti.MRCAPriorProvider"/>
</service>
<service type="has.main.method">
<provider classname="beastfx.app.methodsection.XML2HTMLPaneFX"/>
</service>
<service type="beastfx.app.treeannotator.services.TopologySettingService">
<provider classname="beastfx.app.treeannotator.services.MCCTopologyService"/>
<provider classname="beastfx.app.treeannotator.services.MaxSumCladeCrediblityTopologyService"/>
<provider classname="beastfx.app.treeannotator.services.UserTargetTreeTopologyService"/>
</service>
<service type="beastfx.app.treeannotator.services.NodeHeightSettingService">
<provider classname="beastfx.app.treeannotator.services.CommonAncestorNodeHeigtService"/>
<provider classname="beastfx.app.treeannotator.services.KeepHeightsNodeHeightsService"/>
<provider classname="beastfx.app.treeannotator.services.MeanNodeHeightService"/>
<provider classname="beastfx.app.treeannotator.services.MedianNodeHeightService"/>
</service>
<packageapp description="Interactive Methods Section Generator"
class="beastfx.app.methodsection.XML2HTMLPaneFX"
/>
<packageapp description="Log File Analyser"
class="beastfx.app.tools.LogAnalyser"
/>
<packageapp description="Package health checker"
class="beastfx.app.tools.PackageHealthChecker"
/>
<packageapp description="EBSP Analyser"
class="beastfx.app.tools.EBSPAnalyser"
/>
<packageapp description="Documentiation generator"
class="beastfx.app.tools.DocMaker"
/>
<packageapp description="Calculates statistics on the credible set of a tree posterior"
class="beastfx.app.tools.TreeTraceAnalysis"
/>
</package>