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build-testing.xml
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build-testing.xml
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<!-- Build BEAST FX. JUnit test is available for this build. -->
<project basedir="." default="build_jar_all_BeastFX" name="BUILD_BEAST_FX">
<description>
Build BEAST FX.
JUnit test is available for this build.
$Id: build_BEAST_FX.xml $
</description>
<!-- set global properties for this build -->
<property name="BeastFX" location="../BeastFX" />
<property name="srcFX" location="${BeastFX}/src" />
<property name="buildFX" location="${BeastFX}/build" />
<property name="libFX" location="${BeastFX}/locallib" />
<property name="resourcesFX" location="${BeastFX}/resources" />
<!--
<property name="JAVA_HOME" location="../../Downloads/zulu17.34.19-ca-fx-jre17.0.3-macosx_x64/zulu-17.jre/Contents/Home/"/>
-->
<property name="JAVA_HOME" location="/tmp/zulu17.38.21-ca-fx-jdk17.0.5-linux_x64/"/>
<property name="LD_LIBRARY_PATH" location="$JAVA_HOME/lib"/>
<!--
<property name="javafx-home" location="/usr/lib/jvm/java-8-openjdk-amd64/jre/lib/ext/"/>
-->
<property name="javafx-home" location="../../Downloads/zulu17.34.19-ca-fx-jre17.0.3-macosx_x64/lib/"/>
<property name="release_dir" value="release" />
<property name="distFX" location="${buildFX}/dist" />
<property name="beast2path" location="../beast2" />
<property name="srcBeast2" location="${beast2path}/src" />
<property name="beast2classpath" location="${beast2path}/build" />
<property name="Add_on_dir" value="${release_dir}/add-on" />
<import file="${beast2path}/build.xml" />
<path id="classpath">
<fileset dir="${libFX}" includes="testfx.jar"/>
<fileset dir="${libFX}" includes="aquafx-0.1.jar"/>
<fileset dir="resources/themes" includes="FXSkins-1.0.0.jar"/>
<fileset dir="resources/themes" includes="jmetro-11.6.15.jar"/>
<path location="${buildFX}"/>
<fileset dir="${libFX}" includes="jam.jar"/>
<fileset dir="${beast2path}/lib" includes="beagle.jar"/>
<fileset dir="${beast2path}/lib" includes="colt.jar"/>
<fileset dir="${beast2path}/lib" includes="antlr-runtime-4.10.1.jar"/>
<fileset dir="${beast2path}/lib" includes="commons-math3-3.6.1.jar"/>
<fileset dir="${beast2path}/lib/junit" includes="junit-platform-console-standalone-1.8.2.jar"/>
<fileset dir="${libFX}" includes="assertj-core-3.20.2.jar"/>
<path location="${beast2classpath}"/>
</path>
<!-- start -->
<target name="initBeastFX">
<echo message="${ant.project.name}: ${ant.file}" />
<available file="version.xml" property="versionAvailable"/>
<fail unless="versionAvailable">
** Required file version.xml does not exist. **
</fail>
<!-- Read package name and version from xml file -->
<xmlproperty file="version.xml" prefix="fromVersionFile" />
<property name="version" value="${fromVersionFile.package(version)}" />
<echo message="Version: ${version}" />
</target>
<target name="cleanBeastFX">
<delete dir="${buildFX}" />
</target>
<!-- clean previous build, and then compile Java source code, and Juint test -->
<target name="build_all_BeastFX" depends="cleanBeastFX,compile-allBeastFX,junitBeastFX"
description="Clean and Build all run-time stuff">
</target>
<!-- clean previous build, compile Java source code, and Junit test, and make the beast.jar and beauti.jar -->
<target name="build_jar_all_BeastFX" depends="cleanBeastFX,compile-allBeastFX,junitBeastFX,dist_all_BeastFX"
description="Clean and Build all run-time stuff">
</target>
<!-- No JUnit Test, clean previous build, compile Java source code, and make the BeastFX.jar and beauti.jar -->
<target name="build_jar_all_BeastFX_NoJUnitTest" depends="cleanBeastFX,compile-allBeastFX,dist_all_BeastFX"
description="Clean and Build all run-time stuff">
</target>
<!-- compile Java source code -->
<target name="compile-allBeastFX" depends="initBeastFX,beast.pkgmgmt,beast.base">
<!-- Capture the path as a delimited property using the refid attribute -->
<property name="myclasspath" refid="classpath"/>
<!-- Emit the property to the ant console -->
<echo message="Classpath = ${myclasspath}"/>
<mkdir dir="${buildFX}" />
<!-- Compile the java code from ${srcFX} into ${buildFX} /bin -->
<javac srcdir="${srcFX}" destdir="${buildFX}" classpathref="classpath"
fork="true"
encoding="UTF-8"
memoryinitialsize="256m"
memorymaximumsize="1024m"
>
<include name="beastfx/**/**" />
<!-- compile JUnit test classes -->
<include name="test/**" />
</javac>
<copy todir="${build}">
<fileset dir="${srcFX}" includes="**/*.fxml" />
<fileset dir="${srcFX}" includes="**/*.png" />
<fileset dir="${resourcesFX}" includes="**/*.css" />
</copy>
<echo message="Successfully compiled." />
</target>
<!-- make the BeastFX.hjar and TreeAnnotator.jar -->
<target name="dist_all_BeastFX" depends="compile-allBeastFX" description="create BeastFX jar">
<!-- Create the distribution directory -->
<mkdir dir="${distFX}" />
<!-- Put everything in ${buildFX} into the beast.jar file -->
<jar jarfile="${distFX}/BeastFX.jar">
<manifest>
<attribute name="Built-By" value="${user.name}" />
<attribute name="Main-Class" value="${main_class_BEASTFX}" />
</manifest>
<fileset dir="${buildFX}">
<include name="**/*.class" />
<include name="javascript/**/*" />
<include name="beastfx*" />
</fileset>
<fileset dir="${beast2classpath}">
<include name="**/*" />
</fileset>
<zipgroupfileset dir="${beast2path}/lib" includes="jam.jar" />
<zipgroupfileset dir="${beast2path}/lib" includes="beagle.jar" />
<zipgroupfileset dir="${beast2path}/lib" includes="colt.jar" />
<zipgroupfileset dir="${beast2path}/lib" includes="commons-math3-3.1.1.jar" />
</jar>
<jar jarfile="${distFX}/BeastFX.src.jar">
<fileset dir="${srcFX}">
<include name="**/*" />
</fileset>
</jar>
<jar jarfile="${distFX}/BeastFX.addon.jar">
<manifest>
<attribute name="Built-By" value="${user.name}" />
</manifest>
<fileset dir="${buildFX}">
<include name="**/*"/>
</fileset>
</jar>
</target>
<!-- run beast.jar -->
<target name="run_BeastFX">
<java jar="${distFX}/BeastFX.jar" fork="true" />
</target>
<!-- JUnit test -->
<target name="junitBeastFX">
<mkdir dir="${report}" />
<exec executable="curl">
<arg line=" --output ${BeastFX}/fxtemplates/RelaxedClockModels.xml -O -L https://raw.githubusercontent.com/BEAST2-Dev/beast-classic/master/fxtemplates/RelaxedClockModels.xml"/>
</exec>
<exec executable="curl">
<arg line=" --output ${BeastFX}/fxtemplates/StarBeast.xml -O -L https://raw.githubusercontent.com/BEAST2-Dev/beast-classic/master/fxtemplates/StarBeast.xml"/>
</exec>
<!--
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="- -add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.SimpleTreePriorTest"/>
<arg line="-c test.beastfx.app.beauti.BeautiDivergenceDatingTest"/>
<arg line="-c test.beastfx.app.beauti.BeautiRateTutorialTest"/>
<arg line="-c test.beastfx.app.beauti.BeautiSimpleTest"/>
<arg line="-c test.beastfx.app.beauti.BeautiStarBeastTest"/>
<arg line="-c test.beastfx.app.beauti.CloneTest"/>
<arg line="-c test.beastfx.app.beauti.FixedMeanRateTest"/>
<arg line="-c test.beastfx.app.beauti.LinkUnlinkTest"/>
<arg line="-c test.beastfx.app.beauti.SimpleClockModelTest"/>
<arg line="- -reports-dir build/junitreport"/>
</java>
-->
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.CloneTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.SimpleTreePriorTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.BeautiDivergenceDatingTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.BeautiSimpleTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.BeautiStarBeastTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.FixedMeanRateTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.LinkUnlinkTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.SimpleClockModelTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<java classpathref="classpath" classname="org.junit.platform.console.ConsoleLauncher" fork="true" failonerror="true">
<jvmarg line="--add-exports"/>
<jvmarg line="javafx.graphics/com.sun.javafx.application=ALL-UNNAMED"/>
<jvmarg line="-Djava.library.path=$JAVA_HOME/lib/"/>
<jvmarg line="-Dbeast.user.package.dir=NONE"/>
<arg line="-c test.beastfx.app.beauti.BeautiRateTutorialTest"/>
<arg line="--reports-dir build/junitreport"/>
</java>
<junitreport todir="build/junitreport">
<fileset dir="build/junitreport">
<include name="TEST-*.xml"/>
</fileset>
<report format="frames" todir="build/junitreport"/>
</junitreport>
<echo message="JUnit test finished." />
</target>
<target name="junitreport">
<junitreport todir="${report}">
<fileset dir="${report}" includes="*.xml"/>
<report format="frames" todir="${report}"/>
</junitreport>
<echo message="JUnit test report finished." />
</target>
<target name="test-all" depends="compile-allBeastFX,junitBeastFX">
<echo message="All tests done." />
</target>
<target name="addon"
depends="build_jar_all_BeastFX_NoJUnitTest"
description="release BEAST 2 package version of BeastFX">
<delete dir="${Add_on_dir}" />
<!-- Create the release directory -->
<mkdir dir="${Add_on_dir}" />
<mkdir dir="${Add_on_dir}/lib" />
<mkdir dir="${Add_on_dir}/examples" />
<mkdir dir="${Add_on_dir}/templates" />
<mkdir dir="${Add_on_dir}/html" />
<copy todir="${Add_on_dir}">
<fileset file="version.xml"/>
</copy>
<copy todir="${Add_on_dir}/examples">
<fileset dir="examples" includes="*.xml">
</fileset>
</copy>
<copy todir="${Add_on_dir}/html">
<fileset dir="html" includes="**/*"/>
</copy>
<copy todir="${Add_on_dir}/lib">
<fileset file="${distFX}/BeastFX.addon.jar" />
</copy>
<copy todir="${Add_on_dir}">
<fileset file="${distFX}/BeastFX.src.jar" />
</copy>
<!--
<copy todir="${Add_on_dir}/templates">
<fileset file="templates/BeastFX.xml" />
</copy>
-->
<jar jarfile="${distFX}/BeastFX.addon.v${version}.zip">
<fileset dir="${Add_on_dir}">
<include name="**/*" />
</fileset>
</jar>
<echo message="Add-on version release is finished." />
</target>
</project>