pyproject.toml

[build-system]
requires = [
    "setuptools>=61",
    "wheel"
]
build-backend = "setuptools.build_meta"

[project]
name = "gwaslab"
version = "3.5.5"
authors = [
  { name="Yunye", email="yunye@gwaslab.com" },
]
description = "A collection of handy tools for GWAS SumStats"

readme = "README.md"

dependencies = [
    "pandas>=1.3,!=1.5",
    "numpy>=1.21.2,<2",
    "matplotlib>=3.8,<3.9",
    "seaborn>=0.12",
    "scipy>=1.12",
    "pySAM==0.22.1",
    "Biopython>=1.79",
    "adjustText>=0.7.3, <=0.8",
    "liftover>=1.1.13, <=1.3.1",
    "scikit-allel>=1.3.5",
    "pyensembl==2.2.3",
    "gtfparse==1.3.0",
    "h5py>=3.10.0"
]

requires-python = ">=3.9,<3.11"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.package-data]
gwaslab = [
	"./data/formatbook.json",
	"./data/reference.json",
	"./data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz",
	"./data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz",
	"./data/chrx_par/chrx_par_hg19.bed.gz",
	"./data/chrx_par/chrx_par_hg38.bed.gz",
	"./data/high_ld/high_ld_hla_hg38.bed.gz",
	"./data/high_ld/high_ld_hla_hg19.bed.gz",
]

[project.urls]
"Homepage" = "https://cloufield.github.io/gwaslab/"
"Github" = "https://github.com/Cloufield/gwaslab"