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mkdocs.yml
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site_name: CTGCatalog
site_author: HE Yunye
repo_name: 'GitHub'
repo_url: https://github.com/Cloufield/CTGCatalog/
edit_uri: ""
copyright: "CTGCatalog is licensed under the MIT license"
theme:
name: material
features:
- navigation.tabs
font:
code: Roboto Mono
text: Roboto
palette:
primary: indigo
accent: indigo
extra_css:
- "stylesheets/extra.css"
markdown_extensions:
- toc:
toc_depth: 3
- admonition
- pymdownx.details
- pymdownx.superfences
- pymdownx.arithmatex:
generic: true
extra_javascript:
- javascripts/mathjax.js
- https://polyfill.io/v3/polyfill.min.js?features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
plugins:
- mkdocs-jupyter
nav:
- Home : index.md
- Tools:
- Tools: Tools_README.md
- Drug_discovery: Tools_Drug_discovery_README.md
- Gene_prioritization: Tools_Gene_prioritization_README.md
- Polygenic_risk_scores: Tools_Polygenic_risk_scores_README.md
- Association_tests:
- Association_tests: Tools_Association_tests_README.md
- TWAS: Tools_Association_tests_TWAS_README.md
- sQTL: Tools_Association_tests_sQTL_README.md
- eQTL: Tools_Association_tests_eQTL_README.md
- RWAS: Tools_Association_tests_RWAS_README.md
- Colocalization: Tools_Colocalization_README.md
- Simulation: Tools_Simulation_README.md
- Data_processing: Tools_Data_processing_README.md
- Annotation: Tools_Annotation_README.md
- Fine_mapping: Tools_Fine_mapping_README.md
- Gene_set_pathway_analysis: Tools_Gene_set_pathway_analysis_README.md
- Tissue_and_single_cell: Tools_Tissue_and_single_cell_README.md
- Imputation: Tools_Imputation_README.md
- HLA: Tools_HLA_README.md
- Heritability_and_genetic_correlation: Tools_Heritability_and_genetic_correlation_README.md
- Proteomics: Tools_Proteomics_README.md
- GxE_interactions: Tools_GxE_interactions_README.md
- Mendelian_randomization: Tools_Mendelian_randomization_README.md
- Meta_and_Multi_triat: Tools_Meta_and_Multi_triat_README.md
- Sumstats: Sumstats_README.md
- Reference_data:
- Reference_data: Reference_data_README.md
- Biobanks_Cohorts: Reference_data_Biobanks_Cohorts_README.md
- Protein: Reference_data_Protein_README.md
- Gene:
- Gene: Reference_data_Gene_README.md
- NCBI_refSeq: Reference_data_Gene_NCBI_refSeq_README.md
- UCSC_refGene:
- UCSC_refGene: Reference_data_Gene_UCSC_refGene_README.md
- ucsc_genes: Reference_data_Gene_UCSC_refGene_ucsc_genes_README.md
- HGNC: Reference_data_Gene_HGNC_README.md
- knownGenes: Reference_data_Gene_knownGenes_README.md
- Ensembl: Reference_data_Gene_Ensembl_README.md
- GENCODE: Reference_data_Gene_GENCODE_README.md
- Phenotype: Reference_data_Phenotype_README.md
- Variant: Reference_data_Variant_README.md
- Epigenomics: Reference_data_Epigenomics_README.md
- Expression: Reference_data_Expression_README.md
- Genome:
- Genome: Reference_data_Genome_README.md
- hg38: Reference_data_Genome_hg38_README.md
- xQTL: Reference_data_xQTL_README.md
- Allele_Frequency: Reference_data_Allele_Frequency_README.md
- Visualization:
- Visualization: Visualization_README.md
- Venn_diagram: Visualization_Venn_diagram_README.md
- Workflow: Visualization_Workflow_README.md
- Variants_on_protein: Visualization_Variants_on_protein_README.md
- Heatmap: Visualization_Heatmap_README.md