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Add deepvariant report into housekeeper #80

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karlnyr opened this issue Jun 22, 2023 · 2 comments
Open

Add deepvariant report into housekeeper #80

karlnyr opened this issue Jun 22, 2023 · 2 comments
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@karlnyr
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karlnyr commented Jun 22, 2023

Deepvariant creates a summary report which I would like us to save permanently in Housekeeper.

The report contains the relative counts of variants inside a sample. This could, later on, be used for checking the distribution of het- homozygous variants and possible deviations in the base calling of cases.

The file should be tagged with:

  • deepvariant-vcf-stats
  • sample-id
@Vince-janv
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@karlnyr @jemten Did this ever happen?

@jemten
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jemten commented Oct 25, 2024

Not yet, but I'm aware of the issue and we will add it to the next release

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