diff --git a/README.md b/README.md index 49226f0..4f5b98f 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,8 @@ install [poetry] ``` git clone https://github.com/Clinical-Genomics/genotype-api cd genotype-api -pip install -e . -r requirements.txt +pip install poetry +poetry install ``` ## Usage @@ -26,14 +27,14 @@ Go to `http://localhost:8000/docs` and test the API ## Authorization -There is currently no working demo avalible. -To autorize you'l need to provide a valid ID-token. +There is currently no working demo available. +To autorise you'll need to provide a valid ID-token. ## Description After sample prep a small part of the DNA is sent to MAF where they do SNP calling with a orthogonal method for a predefined set of SNPs. MAF also to gender prediction based on their result. The result from MAF is sent back as an excel sheet and this get uploaded to genotype via the `Upload Plate`-endpoint. -The same samples get sequenced and genotyped inhouse and the result of this is uploaded in the VCF format via the `Upload Sequence`-endpoint. +The same samples get sequenced and genotyped in-house and the result of this is uploaded in the VCF format via the `Upload Sequence`-endpoint. The two analyses for each sample are then compared to check for anomalies. diff --git a/pyproject.toml b/pyproject.toml index ddcfb6b..14febaa 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,8 +1,8 @@ [tool.poetry] -name = "genotype-api" +name = "genotype_api" version = "2.0.8" description = "Genotype is a tool to validate integrity and sex of samples." -authors = ["Your Name "] +authors = ["Måns Magnusson","Maya Brandi"] license = "MIT License" readme = "README.md"