diff --git a/.bumpversion.cfg b/.bumpversion.cfg index a92166d..7953d96 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -5,6 +5,6 @@ tag = True tag_name = v{new_version} message = Bump version: {current_version} → {new_version} [skip ci] -[bumpversion:file:setup.py] +[bumpversion:file:pyproject.toml] [bumpversion:file:genotype_api/__init__.py] diff --git a/Dockerfile b/Dockerfile index 156948d..c0a9b00 100644 --- a/Dockerfile +++ b/Dockerfile @@ -20,10 +20,9 @@ WORKDIR /home/worker/app COPY . /home/worker/app # Install app requirements -RUN pip install -r requirements.txt - -# Install app -RUN pip install -e . +RUN pip install poetry +RUN poetry config virtualenvs.create false \ + && poetry install CMD gunicorn \ --workers=$GUNICORN_WORKERS \ diff --git a/README.md b/README.md index 49226f0..5c4fc04 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,8 @@ install [poetry] ``` git clone https://github.com/Clinical-Genomics/genotype-api cd genotype-api -pip install -e . -r 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b/requirements-dev.txt deleted file mode 100644 index 8c2cca8..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,6 +0,0 @@ -bump2version -coveralls -pre-commit -pylint -pytest-cov -pytest>=5.2< \ No newline at end of file diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index e799d1f..0000000 --- a/requirements.txt +++ /dev/null @@ -1,26 +0,0 @@ -SQLAlchemy -aiofiles -bcrypt -bump2version -click -starlette -coloredlogs -email-validator -fastapi>=0.109.1 -google-auth -gunicorn -httptools -numpy -openpyxl -passlib -pydantic -pymysql -python-dotenv -python-jose[cryptography] -python-multipart -pyyaml -requests -uvicorn -uvloop -sqlalchemy_utils -pydantic_settings \ No newline at end of file diff --git a/setup.py b/setup.py deleted file mode 100644 index 7b850df..0000000 --- a/setup.py +++ /dev/null @@ -1,33 +0,0 @@ -from setuptools import find_packages, setup - - -try: - with open("requirements.txt", "r") as f: - install_requires = [x.strip() for x in f.readlines()] -except IOError: - install_requires = [] - - -with open("README.md", "r") as fh: - long_description = fh.read() - -setup( - name="genotype_api", - version="2.0.24", - description="", - long_description=long_description, - long_description_content_type="text/markdown", - url="https://github.com/Clinical-Genomics/genotype-api", - author="Måns Magnusson, Maya Brandi", - author_email="maya.brandi@scilifelab.se", - install_requires=install_requires, - packages=find_packages(), - include_package_data=True, - zip_safe=False, - classifiers=[ - "Programming Language :: Python :: 3", - "License :: OSI Approved :: MIT License", - "Operating System :: OS Independent", - ], - python_requires=">=3.11", -)