diff --git a/cg/resources/raredisease_bundle_filenames.yaml b/cg/resources/raredisease_bundle_filenames.yaml index 971d5f6d31..21ca8587c4 100644 --- a/cg/resources/raredisease_bundle_filenames.yaml +++ b/cg/resources/raredisease_bundle_filenames.yaml @@ -798,151 +798,151 @@ tag: regions - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_1.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_1.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_2.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_2.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_3.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_3.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_4.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_4.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_5.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_5.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_6.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_6.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_7.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_7.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_8.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_8.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_9.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_9.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_10.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_10.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_11.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_11.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_12.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_12.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_13.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_13.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_14.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_14.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_15.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_15.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_16.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_16.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_17.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_17.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_18.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_18.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_19.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_19.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_20.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_20.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_21.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_21.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_22.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_22.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_X.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_X.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_Y.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_Y.png path_index: ~ step: chromograph_upd tag: sites - format: png id: SAMPLEID - path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID__upd_sites_M.png + path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_sites/SAMPLEID_upd_sites_M.png path_index: ~ step: chromograph_upd tag: sites